Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00225 ATGGCAAAATTTAGCCACTCCAAACTCAATCTCTTCTTCCTCCTGCTACTAATTTCCCTCCTGACCACGGCCGCCGCCCCGGCCGGCCGCCGTCACCCTCTGGACCCACTCTCATCGGACGAAATCGAACTCATACGATCACTCGTCATCAACTCTATTCGCAACCTCTCCACCACCGACGTCACGTTTCAATACGTCGCCCTCACCGATCCCAACAAGCAATATGTACTCTCATGGCTCTCAAACCCCAAAACCTCGCCGCCACCCCGACGCGCCACAGCCATCGTCCGTTACAACAGTTCCACACACGAGATCCTCATAGACCTGGACAAAAAAGCTATAATCTCGAACCGGGTCTACTCCGGTCCAGCCTACTCTATGTTCACATTAAGTGAGCTGTTAGACGCCGTCGCTCTTCCGCAGTCCCACCCACCGTTCGTGGCGGCGATGAACAAGAGAAGGCTGAAAGTGAAAGATGTAATTTGCGCGTGTTATAGCGTTGGGTGGTTCGGGGAAAAAATGAAGCAAAGAAGGATGGTAAAGCTTCAATGTTATTATTCAAATGGGAGTGTCAATTTGTACATGAGGCCAGTGGAAGGCGTGACCGTGACCGTCGATCTCGATCAGATGAAGATTATTGGGTTTCGAGATCGATACGAGGCTCCGGTGCCAAAAGCCGATGGAACTGAATACAGACCATCTATGCTCAAGCCGCCATTTTTGCCACCTTTGAACGGAGTTAAGATGGTGCAGCCGGAAGGACCCAGCTTCAAAGTCAACGATCACACAATTAGTTGGTCAAACTGGGAATTACACGTAGGATTCGACAAGAGAGCTGGACCAATCATATCGCTAGCATCAATCTATGACCTGGAAAAGCAAAAGCGCCGACAAGTAATGTACAAAGGTTTCATATCGGAGCTGTTCGTACCCTACATGGATTTAACCGAAGAATGGTATTACCGAACATTTTTCGACGTGGGCGAATACGGCTTGGGGCAGTACGCAGCGTCATTAGAGCCACTCAGAGACTGCCCGGAAAATGCAGTGTTTATGGACACGTACATCGCTGCCGGAGATGGGAGGCCGATGAAGATGGCCAACACTTTCTGTATATTCGAACGCCACGCCGGTGATATCATGTGGCGTCACACCGAGCGCGCCATTCCAAATAGAATAATTAAAGAGACGAGGGCGGAAGTGAGCTTGGTGGTGAGGATGGTGGCTACTGTGGCTAATTATGACTATGTTTTGGACTGGGAATTTAAGCAGAGCGGCTCCATTATTGCTACTGTTGGGTTAACGGGTTTGCTAGGAGTGAAGGCATCAAAATACACTCACAGAGACCAAATAGAGGAGGAAGTGTACGGCACGTTGATAGCCGAGAATACGATTGGGGTCAACCATGACCACTTCTTCACCTACTATCTCGATCTCGACGTCGACGGCGGCACCAACTCGTTCGTTAAATCCAACCTCCGCACTGTCCGACCACCGAATCCCGATAACCCTAGGAAGAGCTATTGGACGGTGGTCTCCGAGACGGCGAAAACAGAGGCGGATGCGAGGATCAAATTTGGGCGTCAAGAGGCGGAGTTGGTGGTTGTTAACCCTAATCGGAGGACTAGAATGGGGAATCCTGTCGGGTACCGTTTGATTCCGAAGTCGACGGTGGGTCCCCTTCTGAGTGTTGACGATTACCCCCAAATTAGGGCGGCGTTCACGAATTACAATGTGTGGGTTACACCGTATAATATCTCTGAGAAATGGGCCTCTGGGCTCTACACAGATCAGAGCCGTGGAAATGATACCTTGGCTACTTGGACTCTCAGGAACAGGGAGATAGAGAACAAGGACATAGTAATGTGGTACACTCTCGGAGTTCATCATGCACCTTGCCAAGAAGATTTCCCATTAATGCCAACGCTCACCACTGGGTTTGAGTTGAGACCGACCAATTTCTTCGAGAGCAATCCAGTGCTTAAAGTCACCCCTCCCCGCCCGCTCAACCGCTCCGTTTGTGCTCACTGA 2031 50.42 MAKFSHSKLNLFFLLLLISLLTTAAAPAGRRHPLDPLSSDEIELIRSLVINSIRNLSTTDVTFQYVALTDPNKQYVLSWLSNPKTSPPPRRATAIVRYNSSTHEILIDLDKKAIISNRVYSGPAYSMFTLSELLDAVALPQSHPPFVAAMNKRRLKVKDVICACYSVGWFGEKMKQRRMVKLQCYYSNGSVNLYMRPVEGVTVTVDLDQMKIIGFRDRYEAPVPKADGTEYRPSMLKPPFLPPLNGVKMVQPEGPSFKVNDHTISWSNWELHVGFDKRAGPIISLASIYDLEKQKRRQVMYKGFISELFVPYMDLTEEWYYRTFFDVGEYGLGQYAASLEPLRDCPENAVFMDTYIAAGDGRPMKMANTFCIFERHAGDIMWRHTERAIPNRIIKETRAEVSLVVRMVATVANYDYVLDWEFKQSGSIIATVGLTGLLGVKASKYTHRDQIEEEVYGTLIAENTIGVNHDHFFTYYLDLDVDGGTNSFVKSNLRTVRPPNPDNPRKSYWTVVSETAKTEADARIKFGRQEAELVVVNPNRRTRMGNPVGYRLIPKSTVGPLLSVDDYPQIRAAFTNYNVWVTPYNISEKWASGLYTDQSRGNDTLATWTLRNREIENKDIVMWYTLGVHHAPCQEDFPLMPTLTTGFELRPTNFFESNPVLKVTPPRPLNRSVCAH 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1328935 1332158 + CmoCh17G002250.1 Cmo17g00225 400608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00225 676 Gene3D - 127 220 - -
Cmo17g00225 676 Pfam Copper amine oxidase, N2 domain 32 119 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 PANTHER COPPER AMINE OXIDASE 13 668 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 Pfam Copper amine oxidase, enzyme domain 248 661 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 Gene3D Copper amine oxidase, catalytic domain 257 671 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 PANTHER AMINE OXIDASE 13 668 - -
Cmo17g00225 676 SUPERFAMILY Amine oxidase catalytic domain 235 666 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 SUPERFAMILY Amine oxidase N-terminal region 31 122 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 SUPERFAMILY Amine oxidase N-terminal region 124 232 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 Pfam Copper amine oxidase, N3 domain 127 219 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00225 676 Gene3D - 30 126 - -
Cmo17g00225 676 ProSitePatterns Copper amine oxidase topaquinone signature. 403 416 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00225 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101210998 1070.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01122 Cmo17g00225 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01543 Cmo-Chr2:8947217 Cmo17g00225 Cmo-Chr17:1328935 8.51E-176 dispersed
Cmo10g00103 Cmo-Chr10:444706 Cmo17g00225 Cmo-Chr17:1328935 1.88E-87 dispersed
Cmo11g00074 Cmo-Chr11:344115 Cmo17g00225 Cmo-Chr17:1328935 1.50E-81 dispersed
Cmo17g00225 Cmo-Chr17:1328935 Cmo17g00227 Cmo-Chr17:1337408 0 dispersed
Cmo17g00225 Cmo-Chr17:1328935 Cmo17g00226 Cmo-Chr17:1332798 0 tandem
Cmo17g00225 Cmo-Chr17:1328935 Cmo08g01122 Cmo-Chr8:7151886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00225 Cmo_Chr17 FPKM 18.675268 20.696289 10.895828 12.733715 51.593616 34.472713 50.805473 51.348206 54.263554 68.266251