Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00226 ATGGCAAAGTTTAACCCCACAAAACTCTCTCTCTTTTTCCTCCCACTCCTCGTTTCCCTCCTCTCCGCCGCCGCCGCCGCCGTCCGCCGTCACCCTCTGGACTCACTCTCACCGGACGAATTCGATCTCATCCGGTCACTCATCACCGACTCCCTCCCCAACCCCTCCACCACCAACGTCACCTTCCAATACGTCGCCCTCGCCGATCCCAACAAGCAATCTCTACTCTCATGGCACTCAAACCCCAAAACCCCACCGCCGCCCCGACGCGCCGCCGCCACCGTCCGTTGCAACAGTGCCACACACGAGATCCTCATAGACCTGGGCAAAAAAGCTATAATCTCGAACCGGGTCTACTCCGGTCCAGCCTACGCGCCGTTTACATTCGAGGAGCAGTTCGCCGCCGCCGCTCTTCCGCCGTCACACCCACCGTTCGCGGCGGCGATGAAAAAGAGAGGGCTGAAAATGGAAGAGGTGGTTTGCGCGTGTTTTAGCGTTGGATGGTTTGGGGAAAAGAGAAAGCAAAAGAGGACGGTGAAGGTTCAGTGTTACTATTTGGATGGGAGTGTGAATTTGTACATGAGACCGGTGGAAGGCGTAACGGTGACCGTCGATCTCGATCAGATGAAGATTATTGGGTTTCGAGATAGATATGAGGCTCCGATTCCGAAGGCCGATGGAACCGATTACAGAGAATCGATGCTCAAGCCGCCATTTTTGCCTCCTTTGAATGGAATAAAGATGGTGCAGCCGGAAGGCCCCAGCTTTAGAGTCAACGGCCACTCCATTAGTTGGTCAAACTGGAAATTACACTTGGGCTTCGACGAGAGAGCAGGACCAATCATATCGCTAGCATCGATCTATGACATGGAAAAGCAAAAGCACCGACAAGTACTATACAGAGCTTTCATATCAGAGCTGTTCGTACCCTACATGGATTTAACCCAAGAATGGTCCTACCGGACGTTCTTCGACTCCGGCGAGTACGGCTTCGGGCAGTGCGCAGTGCCGTTAGAGCCACTCAGAGACTGCCCAGAAAACGCAGTGTTTATGGACACGTACATGGCGGCCGGAGATGGGAGGCCGGTAAAGATGCCCAACACGTTCTGTATCTTTGAACGCCACGCCGGTGATATCATGTGGCGGCACACGGAGGGCACCATTCCCAATAGAGTTGTCAGAGAGACAAGGCCGGAAGTTAGCTTGGTGGTGAGGATGGTGGCGGCTGTCGGCAACTATGATTATATTGTCGATTGGGAATTTAAGCAGAGCGGCTCCATTATTGCAAACGTCGGGTTAACGGGTTTGCTGGAAGTAAGGGCATCAAAATACACTCACAGTGACCAAATAAAGGAGGAAGTCTACGGCGCGTTGATATCGGAGAATACGATCGGCGTCCGCCATGACCACTTCCTCATCTACCATCTCGATCTCGACATCGACGGCGGCCCCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGACCACGGAGCTCCGATTCCCCTAGGAAGAGCTATTGGACGGTGGTCTCCGAGACGGCCAGAACAGAGGCCGATGCGAGGATCAAATTCGGCAGTCAAGCGGCGGAGTTGGCGGTTGTTAATCCCAATCGGAGGTCCAGATTGGGGAATCCCGTCGGGTACCGTCTGATTCCGAAGTCGGCGGCGGGTCCCCTTATGAGTGTTGACGATTACCCCCAAATTAGGGCAGCGTTCACGAATTACGATGTGTGGGTTACACCGTATAATAGCTCTGAGAAATGGGCCTCTGGGCTCTACACAGATCAGAGCCGTGGAGATGATACCTTGGCGACTTGGAGTCTAAGGAATAGGGAGATAGAGGAGAAGGACATAGTGATGTGGTACACCATGGGGTTTCATCATGTGCCTTGCCAAGAAGATTTCCCATTAATGCCAACGCTTAGCCGTGGGTTTGAGCTAAGGCCAACCAATTTCTTCGAGAGCAATCCTGTTCTTAAAGCCACCCCTCCTCGCCCAATCAACTGCACCATTTGCCCTCTTTGA 2028 53.4 MAKFNPTKLSLFFLPLLVSLLSAAAAAVRRHPLDSLSPDEFDLIRSLITDSLPNPSTTNVTFQYVALADPNKQSLLSWHSNPKTPPPPRRAAATVRCNSATHEILIDLGKKAIISNRVYSGPAYAPFTFEEQFAAAALPPSHPPFAAAMKKRGLKMEEVVCACFSVGWFGEKRKQKRTVKVQCYYLDGSVNLYMRPVEGVTVTVDLDQMKIIGFRDRYEAPIPKADGTDYRESMLKPPFLPPLNGIKMVQPEGPSFRVNGHSISWSNWKLHLGFDERAGPIISLASIYDMEKQKHRQVLYRAFISELFVPYMDLTQEWSYRTFFDSGEYGFGQCAVPLEPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNRVVRETRPEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHSDQIKEEVYGALISENTIGVRHDHFLIYHLDLDIDGGPNSFVKSNLRTVRPRSSDSPRKSYWTVVSETARTEADARIKFGSQAAELAVVNPNRRSRLGNPVGYRLIPKSAAGPLMSVDDYPQIRAAFTNYDVWVTPYNSSEKWASGLYTDQSRGDDTLATWSLRNREIEEKDIVMWYTMGFHHVPCQEDFPLMPTLSRGFELRPTNFFESNPVLKATPPRPINCTICPL 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1332798 1337080 + CmoCh17G002260.1 Cmo17g00226 400609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00226 675 Pfam Copper amine oxidase, N2 domain 31 118 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 Gene3D - 127 219 - -
Cmo17g00226 675 PANTHER AMINE OXIDASE 16 670 - -
Cmo17g00226 675 SUPERFAMILY Amine oxidase catalytic domain 234 665 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 SUPERFAMILY Amine oxidase N-terminal region 123 231 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 ProSitePatterns Copper amine oxidase copper-binding site signature. 624 637 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 Gene3D - 29 125 - -
Cmo17g00226 675 Gene3D Copper amine oxidase, catalytic domain 256 670 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 SUPERFAMILY Amine oxidase N-terminal region 30 121 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 Pfam Copper amine oxidase, N3 domain 126 218 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 Pfam Copper amine oxidase, enzyme domain 246 660 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00226 675 PANTHER COPPER AMINE OXIDASE 16 670 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00226 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101210998 1116.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01122 Cmo-Chr8:7151886 Cmo17g00226 Cmo-Chr17:1332798 0 dispersed
Cmo17g00225 Cmo-Chr17:1328935 Cmo17g00226 Cmo-Chr17:1332798 0 tandem
Cmo17g00226 Cmo-Chr17:1332798 Cmo17g00227 Cmo-Chr17:1337408 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00226 Cmo_Chr17 FPKM 16.084803 20.793697 12.970947 13.99663 59.938248 45.117764 58.468338 69.761505 71.852158 73.375153