Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00227 ATGGCTCTTCCTCTGTTTCTTCTTCTTGTTCTTCACCTTCATTTCTCCATGGCAGCGCCGCCACCCCATTTCCATCCCCTCGACCCTCTGAACCCGGCGGAGCTCGACCAAATAAGGCTCATTATCCAAAAATCCCACCTGGGAAACCTTCAAAATCTCACATTTCACTTCGTTGACTTGGAGGAACCAGAGAAGAAACATGTTCTTTCCTGGCTCTCTTCCGGTGAACAAAACAGCCACACCCACCTCCACCCCCCGCCGCGTCAAGCCAAGGTTGTGGTTCGTGCGGCGGATTCCACCCACGAGCTAGTTGTAGACCTTGCCACACGGTCGATCAAATCTGACCATGTCTATAACGGCCATGGATATCCTCCTTTCACTTTTCTCGAGCTCTTCCAAGCTAGTAAATTACCTCTCAATTACCCAAAATTCAAAGCTTCCATTCAAAGAAGAGGCTTGAATTTGTCTCATGTTTCTTGCATCCCATTTACAGTCGGCTGGTATGGCGAGAAAACGACCAAAAGGGTTCTAAAAGCTGCGTGCTTTTACAGAGAAGGAACCAGCAATGTCTTCTCCCGGCCAATTGAAGGCATAATTACACTAATCGACGTCGATTCGATGAAAATCATCGACTATTCCGACAGATTCACCGCCCCTTTACTGGAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCACAAATCCACCAATCTCAACGCGACAAAATCCCATTTCACCGTCGAAGGCCATCGAGTAAAATGGGAAAATTGGGTCTTCCACGTGGGGTTCAACGCCAGAGCCGGCGTTATCATCTCGACAGCCTCCATTTTCGACGACGAGAAGAAGAAATTCCGACGAGTGCTTTACAGAGGACATATTTCAGAGACGTTTGTGCCGTATATGGATCCAACAAATGAATGGTACTTCAGAACCTTCATGGATATCGGAGAGTTTGGATTTGGGCGGTCGGCGGACACTTTGCAGCCACTGATTGACTGCCCGGAATCCGCCGAGTATCTCGACGGGTACATGGCCGGCGCCGACGGTAGAGCACAGAAGGTAACCAGAGCAATCTGTATCTTCGAACGCCAATCAGGGGACGTTTTATGGAGACATACAGAGATCAATATTCCTGGAAAAGTGATTAGACGAGGGGAGGCGGAGAGGAGCTTGGTGGTTCGAATGGTGGCAAATGTTGGAAACTATGACTATGTTCTTGACTGGGAATTCAAAAGGAGTGGCTCTATTAAAATTGGGATAGCTTTAACGGGGCTTTTGGAGGTGAAGGCCACACCGTACAGAAACAAGGTAGATATAACGGAAGAAACATACGGAACTCTGATCGCCGCCAACACGGTGGCCGTCAACCACGACCACTTCCTAACCTACTACCTTGACCTCGACGTTGACGGCACCGACAATTCCTTCGTCAAAGCCAAGTTGACTACGCAAACGCCGACAACGAAGGTCAACGCCACGTCACCCCGGAAAAGTTACTGGAAAATTAACAGAGAGACCATCAAAACCGAAGCTGAAGCCAAGCTTCAGCTGAGCTCCGTCCCAGCCGAGCTCTTGTTTGTAAACCCCAATAAGAAGACGAAGATTGGGAATCCGGTTGGCTACCGGCTCATCACCGGACAACCGGTTAATTCCTTACTGGCCGACGATGACTACCCTCAAATCAGAGCGGCTTACACCAAGTACCCGTTATGGGTGACTCCTTATAACAAGTCGGAGAGATGGCCGGTCGGGTTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCTGTTTGGGCCAAAAGAAATAGGAGAATCGAGAATAGAGATATTGTTGTGTGGTACACGGTGGGGTTCCATCACAGCCCTTGCCAAGAGGAGTTTCCGGCGATGACGGCTCTCCATGGCGGTTTCGAGCTCCGACCAGCTAATTACTTTGATAGAAATCCTTTGCTTAAATAA 1968 49.09 MALPLFLLLVLHLHFSMAAPPPHFHPLDPLNPAELDQIRLIIQKSHLGNLQNLTFHFVDLEEPEKKHVLSWLSSGEQNSHTHLHPPPRQAKVVVRAADSTHELVVDLATRSIKSDHVYNGHGYPPFTFLELFQASKLPLNYPKFKASIQRRGLNLSHVSCIPFTVGWYGEKTTKRVLKAACFYREGTSNVFSRPIEGIITLIDVDSMKIIDYSDRFTAPLLESEGTDYQSKKTEHKSTNLNATKSHFTVEGHRVKWENWVFHVGFNARAGVIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRSADTLQPLIDCPESAEYLDGYMAGADGRAQKVTRAICIFERQSGDVLWRHTEINIPGKVIRRGEAERSLVVRMVANVGNYDYVLDWEFKRSGSIKIGIALTGLLEVKATPYRNKVDITEETYGTLIAANTVAVNHDHFLTYYLDLDVDGTDNSFVKAKLTTQTPTTKVNATSPRKSYWKINRETIKTEAEAKLQLSSVPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPVGFYADRSRGDDGLAVWAKRNRRIENRDIVVWYTVGFHHSPCQEEFPAMTALHGGFELRPANYFDRNPLLK 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1337408 1340231 + CmoCh17G002270.1 Cmo17g00227 400610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00227 655 Pfam Copper amine oxidase, N3 domain 124 216 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 Pfam Copper amine oxidase, N2 domain 25 116 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 Gene3D - 126 218 - -
Cmo17g00227 655 SUPERFAMILY Amine oxidase N-terminal region 122 228 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 PANTHER COPPER AMINE OXIDASE 6 655 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 PANTHER PRIMARY AMINE OXIDASE 1 6 655 - -
Cmo17g00227 655 Gene3D - 24 124 - -
Cmo17g00227 655 SUPERFAMILY Amine oxidase catalytic domain 244 654 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 SUPERFAMILY Amine oxidase N-terminal region 22 123 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 Pfam Copper amine oxidase, enzyme domain 245 653 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmo17g00227 655 Gene3D Copper amine oxidase, catalytic domain 247 655 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00227 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222232 1133.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00225 Cmo-Chr17:1328935 Cmo17g00227 Cmo-Chr17:1337408 0 dispersed
Cmo17g00226 Cmo-Chr17:1332798 Cmo17g00227 Cmo-Chr17:1337408 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00227 Cmo_Chr17 FPKM 4.521096 5.306403 3.209654 3.610264 2.226786 1.698213 2.231382 8.891265 8.30979 8.793083