Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00228 ATGGCTTCTTCTTTGGATTGCCTCCTTTTCGATTTGGATGACACACTGTACCCTTTCAGCACTGGAATTGCAGCTGCTTGCAAGAAAAACATCGAAGATTTTCTCATCGAGAAATTTGGATTCCCGAAAACCCAAGCTCCGATTCTCCGGACAGAGCTTTTTAAAACATACGGCAGCACTCTGGCTGGTTTGCGAGCATTGGGCTATGACATTCATGCCGATGATTACCATGATTTCGTGCACGGGAGGCTGCCGTACGACCGGATCAAACAGGACTTTCAGCTCCGGCGTCTCTTACTGACCATTCCGCAAAGAAAAATCATATTCACGAATTCCGACATGAAGCATGCGACCGAAGTGCTCGGTCGATTGGGCTTAGAGGGTTGTTTCGAGAAGATCATATGTTTCGAGACGATGAATCCAAATCTTCCGACGGCGACTCGGCCGAACGAGTTTCCGGTCGTTCTCAAGCCGTCGATGGACGCCATGAGAATCGCTCTAGACGCCGCCGACATTGACCCCCGTCGTACGCTGTTCCTCGACGACAGCGTCCGCAACATCGCCGCCGGAAAAGCCATCGGCCTCCGTACCGTTCTGGTGGGAAAATCATCGAAGAGTAAGGAAGCGGATTATGCGATGGAGACGGTGCATAATTTGGCACAAGTAGTTCCAGAGATACGGGTAGCTATAGAATCAAACAGTGGCAATGAAATGATCAATCGGAGTCGGAGCGAAGTTGATTTGGTTCTCATGTCAACAACTGTCGGTGCTTAG 774 49.87 MASSLDCLLFDLDDTLYPFSTGIAAACKKNIEDFLIEKFGFPKTQAPILRTELFKTYGSTLAGLRALGYDIHADDYHDFVHGRLPYDRIKQDFQLRRLLLTIPQRKIIFTNSDMKHATEVLGRLGLEGCFEKIICFETMNPNLPTATRPNEFPVVLKPSMDAMRIALDAADIDPRRTLFLDDSVRNIAAGKAIGLRTVLVGKSSKSKEADYAMETVHNLAQVVPEIRVAIESNSGNEMINRSRSEVDLVLMSTTVGA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1343928 1346247 + CmoCh17G002280.1 Cmo17g00228 400611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00228 257 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 3 230 - -
Cmo17g00228 257 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 2 255 - -
Cmo17g00228 257 PANTHER HYDROLASE, SUBFAMILY IA, VARIANT 3, PUTATIVE-RELATED 2 255 - -
Cmo17g00228 257 SUPERFAMILY HAD-like 1 222 IPR036412 -
Cmo17g00228 257 Gene3D - 3 89 - -
Cmo17g00228 257 SFLD C1.5.3: 5'-Nucleotidase Like 3 230 IPR010237 -
Cmo17g00228 257 Pfam Haloacid dehalogenase-like hydrolase 8 200 IPR041492 -
Cmo17g00228 257 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 155 200 IPR006439 -
Cmo17g00228 257 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 6 200 IPR010237 -
Cmo17g00228 257 Gene3D - 94 235 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00228 K07025 K07025; putative hydrolase of the HAD superfamily - csv:101214793 424.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01123 Cmo17g00228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00134 Cmo-Chr14:583399 Cmo17g00228 Cmo-Chr17:1343928 1.81E-67 dispersed
Cmo17g00228 Cmo-Chr17:1343928 Cmo08g01123 Cmo-Chr8:7161906 6.58E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003737 1 2 0 1 1 2 2 2 2 1 2 2 1 1 1 2 2 1 2 2 1 1 1 1 1 2 1 6 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00228 Cmo_Chr17 FPKM 6.076845 7.243855 23.129528 21.281307 13.433682 13.551973 13.471232 31.348034 31.814655 32.403473