Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00232 ATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCCAACGGGCTCTCTAGACGTAGATACAGGAGTAGTAGTCTCCGTGACTCTCCAGAGGATGATGGACAGTTGGAGTTACAGGATACCGTAAGATTAAGAGATCGAGGTAGCGGGAAGAAAGATCGAGATCGAGATAGGGATAGAGACAGAGATCGAGACCGTGAAAGAGATCGGCTAAGTAGGAGCAAGAGGAGGAGAGCCGATAGATTGATTCATGGTGGTAGCAATAGGGAGGATGGAGGTGAAGATAGTTCTGAGGAGAGTGTAAATGACGAAGAGGATGAAGAAGACGACGATGGCGGTGGTGGTGGAGCGTCCGTCAGAATGCTTCCGCCAAATCCGGCGGCGATTTTGAGCCATCGGAAGACTTTTCCACCGGCGAAGAGTTTCAGAGCAGCACCGTCGTGGAAAGCAGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACGAAGCGGTCTCATGAATGTTGGCCAGCAGCGACGGGCGGCGGAACGGCTATAGAGGCCATTAACCGGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACAGCAATGGCGGCGACGTTTCAGCCTCCAGCCTCGCCTTCTTCTTCCAATGCTCCGGTGAGGAAGAAGCTGAAGCAAACCGGACCTAAACCCCGGCCGCTCAAATCCTCCTCAAAACTATCATCCACGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGTATGATGAGACAGCCACAAGGTCCTCCGAAACAAGAACCCTCTACTACTGATTCCATGAAGTTCGATTCCAAATCAACCACTGATGCCAAATCCAGAGTTTCATCGCCGATTTCCAACTCTTCTGATTTGCCTACCCCTTCCATTTTGCCTCAAAATTCCAGTTCTTCTGTCACTCCGATATCAACCACAGCACCCAAGAGGAAAAGACCGCGTCCAGTGAAGTACGACGACGAGAACACCGCCACCTTCAGCCTTCGGAATAGCCCCATTTCATCAAGAGCCAAAGCTGAGGCCGATCAGCCGCCTACCAACGCCGAGATCCCTTCATCTAATGTGGACAAAGTTTCAGGATCTGCAGGTGAAAATGTAGTTTCGAATGAATCTGCTAATTCTCTGGCTTTACCGGAGTCCCGTCCAGAATCTATGAAGGTGGACACAACCAGTGCCATGCCCAATTCCAAGCCATTGACTGAAGAATCAGACGGCAAAGATTTGGGTTCTAGCAAGGAAGAACCCCAATCTCCCCTGAAGGAATCAAATGGCCCTAGATTAGAAGATAAGCGAGAGGATATGACAGCGACCAAATCAAATTCATCAACATTCGATGCTGAGAACCAGCGGGATGATAAGTACAAGATAGATCTAATGGCTCCTCCACCATTACGAGCTTCTCCGGAAAGAGAGGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACACGGAAATGAAGCCTCTGATAAATGAAGACGACAAAGGAACAATCAGACTTGGGGGGGCTAAAGAGGCGCTGAACGTGGAGTCTAAGGCTATACCAGCTGAAGAAGCTGATTCAAAGAATCCCATTGCTTGCAAAGATAGGAATTTTGACCTTCAGCTTGATTTAGTTAAGACGATTGATAGAGATGGCCCCAACAAGCTCCACCAGCATGTTCAGAAACAGCCGCCGCAACCCAGCTCGGAAAAGGCTGGATCTGCCGTACAAGCGGGCTCTCTTCCTTTGCCCATGTCTCTACCCGGTTGGCCAAGTGGGCTGCCTCCTATGGGATATGTGGCACCACTACCAGGAGTTGTGTCTGTGGATGGAAGCGCTTTGCCTGCTGCTGCCATGCAGCCCCCAAATTTCCTTTTTCCTCAACCTCGGCCGAAGAGGTGTGCTACGCACTTCTACATTGCTCGGAATATATTGTATCATCAACAAATTGCGAGGATGAATCCATTCTGGCCAGCAGCAGCAGGTTCTGCTTCCTTGTTTGGGGCCAAGCATGGTAATCTCAGCATCGTGCCCTCTACAGATTTGCAAGGAAATCTTCCGAAAAGCGGGGTAAATGCAATGCAGGATAAGGGACAGAGCCTCGGAATGTTTACGGGTCATGCTGGGAAGGATAGGGGCTCTCCAGCTGTTAACGTTGTCGATGCCTCTCAGAGAAAGCAAATCTTGCTTCAGCAAGCTCTACCGCCGGGAGCACCTAGTAATATCCTGCATGGCCCTGCTTTCATTCTGCCTCTGAGCCAGCAGCAACAGGCAGCTGTAGCCACATCGGTTCGGCCAGTTTCTGTGAAGTCTCCTCCTCCTAGTGGGAATGCCAACGGCAGCGTGGCTTCAAATGCTTCAAATCCAGCCTCTGTTAGTACCTCACCCGCTGCAGCGATGAGTTTCAACTATTCGGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTACAGAACAATGGATATACATACCCAATTCCAGCACACGTAGGAGCACCGCCTGCATATAGAGGAAGCCACGCTCATTCAATGCCGTTTTTCAACGGGTCGTTTTATTCTTCACAAATGCTTCATCCTTCGCAGCTTCAGCAGCAACCGCCACCTCAGTCTCACCCTAATCAACAGGGACTTCAAAATGCTAATACTGCCAATGGTTCCTCATCGTCTCAGAAGAACATGTCTAATCAGCAGCAGAGGCCACATGGGAGCAGTTTCAGTGGGAACTTTCAAGGCTTTCCTGCATCCAGAAATCTGCCATCTCAATCACAGCACCCACAGCAGCAGCAGAACCACGCCTCTCATCAAACAAGGCAACACGAGTCTGAAATCGGCGGTGAAGATAGCCCGTCCACTGCTGATAGTCGAGTGAATCTTGCTAATCTGAGTGTCTACGGTCCAAATTTTCCAATGCCAATGCATACTCCTAATTTTGCTATGATGCCTCCTGCATCGATGGTGGCCGCAGGTGGGGCACCTATTGACAAGAAACAGCAGCCTCAACAACAGTCACAGGGTTCAAAAGGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCTCCCAACGGGGCGCCCTCTGCTCCTGGGCTTGACCTTTCATCCTTATCACCAAATCATCCTATTTTTCAAAGTCTTCCTGAGATCACCAGGCAAGGGTATCATCAGATTATGGCCGCTGCCGCCGCTCAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAGCAGAAGAAGGAAAAACCACACATTCATCGGTTGGGGAGGATGAGAGAAAAAATATGTCTGTTAAGGCACCTCCAACTGTTGGTCAGTCCATTGCCTTCTCTAGAACTGATTTAGCCGAGACATTAATTTCCTCAATGCCAGCTGGGGCTGCTGTTGATAGCTCTGCAAGAACTCTCAAACTTGGTTCTACTGCTAGAGCTTCAGGTTCCGTTATGCCGTCTGGGATGAGCACTGTAAATATGTGTGGTTCCCAGCATCAACTACAGCGAAATCATCATCATCATCAGCAGCAGCAGCAGCAGATGATTCAGCTTCAAAAGCAGCAGCAATATGCAGCTGCTGCAGCTGCGGTAGCGAGGACGAAAACATCAGCAACAAGTAATGGCAATGTTTATGCCGAGCACCCTCCTGCGTCTTCGATGGCTGCGAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCCAAGTAACAGCAATAGTCCTGCTCAATCTCCTCAGTGGAAAAATTCTGTAAGAACCACTTCATCTCAGGTACCAACCCCCCCTCATTCTTCGTCTAATACATCATCTATCAAAAATCTTCCCCAACAGCAGCAGCAGGGGCGTCCACAGCAAAATCACTCTCAGATTTCTTTTGCGGCGAGCTCAAAATCTACAGCACAATCACAAGGACAGCAACCTGCAAGCAGTAATCATCCGCAATCGCCCGGAATGATTGGCTCACCAACTAATTCTTCACTCTCAAAGGGTGCCGGTGGAAGCCCACGGACAGCTACTTCGGGTTCCATGAGTCACAAAGTTGGTCAATCATCTTCTTTATCATCACAGCAGACAAAGAATCCTACATCTATGCCCCCTCAGAAGTTATCTCCTGCTGGTGGGCGAAACGTTACGTCAATTCTTGGCAATAATCAAATGACCTCTTCAAGTTCTGGAACTAAATTATCCCAACAGTCGCAGCAGCAACAACAGCAACAGCAACATTTGTCGAAGCAATCATTGCAGCAAGCCCAGGTGCTCTTCCCTTATATGCAGGCCCAAGTTTCCCATTCAAGTAGCAGTCCAACTGCTTCACCTTCAAGCGGTTATTATCCAAGGCGTCGTCCTGAGCAGCAATCACAATTGCAGGGCTCAGGAGGAACATCCTCAAATGGAATGCTATCCCTATGCCACCCTGTTACACTCGGAGGTAACAGCACTACTGATCCAGCTAAGGCCGTTGCTGCTGCGGCTGCTGCCACAGCCAACAATATGAAGGGCGGTAGCTTATCCACACAAGCCATTCTCCATCCTGCTCAGTTTGCTGCTGCACAGTCCTCCGGTAATCCTCATCAACTTGTACCTGCAGGTTTTCCTTGCGTGCATACCGCTGCAGTGCAAGTGAAATCAACAGAGCAGAAACAACCTGCGGGTGGGTAG 4713 49.44 MDRNREARRTTTNMAASNGLSRRRYRSSSLRDSPEDDGQLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRERDRLSRSKRRRADRLIHGGSNREDGGEDSSEESVNDEEDEEDDDGGGGGASVRMLPPNPAAILSHRKTFPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAATGGGTAIEAINRQASTSPVRPSLTAMAATFQPPASPSSSNAPVRKKLKQTGPKPRPLKSSSKLSSTAQDEIEIEIAEVLYGMMRQPQGPPKQEPSTTDSMKFDSKSTTDAKSRVSSPISNSSDLPTPSILPQNSSSSVTPISTTAPKRKRPRPVKYDDENTATFSLRNSPISSRAKAEADQPPTNAEIPSSNVDKVSGSAGENVVSNESANSLALPESRPESMKVDTTSAMPNSKPLTEESDGKDLGSSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDAENQRDDKYKIDLMAPPPLRASPEREGEIDFVAVDAKPMVIDADTEMKPLINEDDKGTIRLGGAKEALNVESKAIPAEEADSKNPIACKDRNFDLQLDLVKTIDRDGPNKLHQHVQKQPPQPSSEKAGSAVQAGSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPAAAMQPPNFLFPQPRPKRCATHFYIARNILYHQQIARMNPFWPAAAGSASLFGAKHGNLSIVPSTDLQGNLPKSGVNAMQDKGQSLGMFTGHAGKDRGSPAVNVVDASQRKQILLQQALPPGAPSNILHGPAFILPLSQQQQAAVATSVRPVSVKSPPPSGNANGSVASNASNPASVSTSPAAAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGSHAHSMPFFNGSFYSSQMLHPSQLQQQPPPQSHPNQQGLQNANTANGSSSSQKNMSNQQQRPHGSSFSGNFQGFPASRNLPSQSQHPQQQQNHASHQTRQHESEIGGEDSPSTADSRVNLANLSVYGPNFPMPMHTPNFAMMPPASMVAAGGAPIDKKQQPQQQSQGSKGLEQSQTIPLSFAPPNGAPSAPGLDLSSLSPNHPIFQSLPEITRQGYHQIMAAAAAQVAQQKKNYRVAEEGKTTHSSVGEDERKNMSVKAPPTVGQSIAFSRTDLAETLISSMPAGAAVDSSARTLKLGSTARASGSVMPSGMSTVNMCGSQHQLQRNHHHHQQQQQQMIQLQKQQQYAAAAAAVARTKTSATSNGNVYAEHPPASSMAAKFPNALSSFSQNLVPSNSNSPAQSPQWKNSVRTTSSQVPTPPHSSSNTSSIKNLPQQQQQGRPQQNHSQISFAASSKSTAQSQGQQPASSNHPQSPGMIGSPTNSSLSKGAGGSPRTATSGSMSHKVGQSSSLSSQQTKNPTSMPPQKLSPAGGRNVTSILGNNQMTSSSSGTKLSQQSQQQQQQQQHLSKQSLQQAQVLFPYMQAQVSHSSSSPTASPSSGYYPRRRPEQQSQLQGSGGTSSNGMLSLCHPVTLGGNSTTDPAKAVAAAAAATANNMKGGSLSTQAILHPAQFAAAQSSGNPHQLVPAGFPCVHTAAVQVKSTEQKQPAGG 1570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1364458 1370739 - CmoCh17G002320.1 Cmo17g00232 400615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 574 597 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1444 1485 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 579 595 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1016 1041 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1097 1118 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 878 974 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1160 1182 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 100 116 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1009 1057 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 25 99 - -
Cmo17g00232 1570 PANTHER PROTEIN TIME FOR COFFEE 1 1566 IPR039317 GO:0042752
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 783 814 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 878 955 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 197 227 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1097 1115 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1 141 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 343 418 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 236 250 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 197 492 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1160 1199 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 1249 1431 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 271 326 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 10 24 - -
Cmo17g00232 1570 MobiDBLite consensus disorder prediction 420 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00232 - - - cpep:111807464 2599.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01126 Cmo17g00232 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00232 Cmo-Chr17:1364458 Cmo17g01152 Cmo-Chr17:9351858 2.09E-108 wgd
Cmo17g00232 Cmo-Chr17:1364458 Cmo08g01126 Cmo-Chr8:7181023 0 wgd
Cmo17g00232 Cmo-Chr17:1364458 Cmo08g00345 Cmo-Chr8:2123138 1.87E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00232 Cmo_Chr17 FPKM 0.887562 0.0 1.337676 1.72704 1.244081 1.400506 1.785943 1.655699 1.593608 1.71514