Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00235 ATGCTATCGAATCAGCTGCAGAATGGGATGGATAGAGCAAAAAGCATGTGGTCTCGTCTTCCGGACACCGATGAAAATGAGGACGACCTCGTTAGCTTCTTGAAGAAGAACGATGGGGGCGGCGTCGAAAGCCTTGATTACGAGGTCATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGAAGATTATTTGTTGGCTATAGTGTGGTAGTTAAGTGGCTGTATGCTTTGTTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCTCTAATTCAGAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCCATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACTCATTTTGCTCCTGCAGCAGCTGGGTCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCTTAATCGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGGCCCCTTGTACATACGGGCGCCTGTATTGCTTCTTTGCTAGGACAAGGTGGATCTGGTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTAACATGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTTACGTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCGATGGGATGGTGTAAGAGTGGGAAGTGTGGCCATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGGGGAGTTGTTGCCTATGACTGTGATTGGGATTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACGAATTGGCGACGGAACCATTTGCACAAAAAGGGGAACCGAGTCAAGATCATTGAAGCTTGTCTCATCTCGGTATTAACATCAATTATCTCGTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCGGGGACGTATGGGAATTATGTCAATTTTTATTGTAGCAAGGAAAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACGATGCATGAATTCAGTGCGCGGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACGTTTGGTACTGCGGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTCGTGGTTAGTTTCTACAAAAAGCCGAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCGTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTTTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAGTTTTTACCTCTCATAATGCTTGTCCTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTCTACGAAGAGCAAGCCCAGTTGAAGGGTATTCCGTTACTGGAATCGAGACCGAAGTACCAGATGCGGAAAATAACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCGTTCCCCCGCGTTGTTAAGGTTGCTGATATTGTTAGTATTTTACGGAGCAACAGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAACGGAGAAACACGTGTCATTGGACTAATGCTTAGAAGTTACTTGTTAGGACTACTGCAGTCCAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATCCAAGAGGATCCATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGTGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGA 2394 43.65 MLSNQLQNGMDRAKSMWSRLPDTDENEDDLVSFLKKNDGGGVESLDYEVIENYAYWDEQAQRGRLFVGYSVVVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSGKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGIIGGLLGALFNQLTLYMTNWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPDLGNECPRPPGTYGNYVNFYCSKENEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADIVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSMPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVESPLLNGLLVNNTDG 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1386457 1394930 - CmoCh17G002350.1 Cmo17g00235 400618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00235 797 ProSiteProfiles CBS domain profile. 702 758 IPR000644 -
Cmo17g00235 797 Pfam CBS domain 703 749 IPR000644 -
Cmo17g00235 797 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo17g00235 797 Gene3D - 574 756 IPR046342 -
Cmo17g00235 797 SUPERFAMILY Clc chloride channel 52 574 IPR014743 -
Cmo17g00235 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 789 - -
Cmo17g00235 797 CDD ClC_6_like 43 572 - -
Cmo17g00235 797 SMART cbs_1 705 753 IPR000644 -
Cmo17g00235 797 SMART cbs_1 592 644 IPR000644 -
Cmo17g00235 797 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo17g00235 797 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo17g00235 797 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo17g00235 797 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo17g00235 797 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo17g00235 797 SUPERFAMILY CBS-domain pair 577 749 IPR046342 -
Cmo17g00235 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 789 - -
Cmo17g00235 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 749 - -
Cmo17g00235 797 Gene3D Clc chloride channel 68 573 - -
Cmo17g00235 797 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01128 Cmo17g00235 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00948 Cmo-Chr4:4837882 Cmo17g00235 Cmo-Chr17:1386457 0 dispersed
Cmo16g00824 Cmo-Chr16:4330802 Cmo17g00235 Cmo-Chr17:1386457 0 dispersed
Cmo17g00235 Cmo-Chr17:1386457 Cmo08g01128 Cmo-Chr8:7198056 6.77E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00235 K05016 - csv:101215989 1491.09