Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00235 | ATGCTATCGAATCAGCTGCAGAATGGGATGGATAGAGCAAAAAGCATGTGGTCTCGTCTTCCGGACACCGATGAAAATGAGGACGACCTCGTTAGCTTCTTGAAGAAGAACGATGGGGGCGGCGTCGAAAGCCTTGATTACGAGGTCATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGAAGATTATTTGTTGGCTATAGTGTGGTAGTTAAGTGGCTGTATGCTTTGTTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCTCTAATTCAGAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCCATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACTCATTTTGCTCCTGCAGCAGCTGGGTCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCTTAATCGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGGCCCCTTGTACATACGGGCGCCTGTATTGCTTCTTTGCTAGGACAAGGTGGATCTGGTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTAACATGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTTACGTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCGATGGGATGGTGTAAGAGTGGGAAGTGTGGCCATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGGGGAGTTGTTGCCTATGACTGTGATTGGGATTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACGAATTGGCGACGGAACCATTTGCACAAAAAGGGGAACCGAGTCAAGATCATTGAAGCTTGTCTCATCTCGGTATTAACATCAATTATCTCGTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCGGGGACGTATGGGAATTATGTCAATTTTTATTGTAGCAAGGAAAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACGATGCATGAATTCAGTGCGCGGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACGTTTGGTACTGCGGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTCGTGGTTAGTTTCTACAAAAAGCCGAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCGTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTTTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAGTTTTTACCTCTCATAATGCTTGTCCTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTCTACGAAGAGCAAGCCCAGTTGAAGGGTATTCCGTTACTGGAATCGAGACCGAAGTACCAGATGCGGAAAATAACAGCAAAGGAGGCCTGTGGAAAAAGGGTTGTCTCGTTCCCCCGCGTTGTTAAGGTTGCTGATATTGTTAGTATTTTACGGAGCAACAGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAACGGAGAAACACGTGTCATTGGACTAATGCTTAGAAGTTACTTGTTAGGACTACTGCAGTCCAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATCCAAGAGGATCCATGCCAACCAGGCATAATTTCAGTGAGTTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATCAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTTGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGTGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGA | 2394 | 43.65 | MLSNQLQNGMDRAKSMWSRLPDTDENEDDLVSFLKKNDGGGVESLDYEVIENYAYWDEQAQRGRLFVGYSVVVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSGKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGIIGGLLGALFNQLTLYMTNWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPDLGNECPRPPGTYGNYVNFYCSKENEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADIVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSMPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVESPLLNGLLVNNTDG | 797 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 1386457 | 1394930 | - | CmoCh17G002350.1 | Cmo17g00235 | 400618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00235 | 797 | ProSiteProfiles | CBS domain profile. | 702 | 758 | IPR000644 | - | |
Cmo17g00235 | 797 | Pfam | CBS domain | 703 | 749 | IPR000644 | - | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
Cmo17g00235 | 797 | Gene3D | - | 574 | 756 | IPR046342 | - | |
Cmo17g00235 | 797 | SUPERFAMILY | Clc chloride channel | 52 | 574 | IPR014743 | - | |
Cmo17g00235 | 797 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 4 | 789 | - | - | |
Cmo17g00235 | 797 | CDD | ClC_6_like | 43 | 572 | - | - | |
Cmo17g00235 | 797 | SMART | cbs_1 | 705 | 753 | IPR000644 | - | |
Cmo17g00235 | 797 | SMART | cbs_1 | 592 | 644 | IPR000644 | - | |
Cmo17g00235 | 797 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cmo17g00235 | 797 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cmo17g00235 | 797 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cmo17g00235 | 797 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cmo17g00235 | 797 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
Cmo17g00235 | 797 | SUPERFAMILY | CBS-domain pair | 577 | 749 | IPR046342 | - | |
Cmo17g00235 | 797 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-D | 4 | 789 | - | - | |
Cmo17g00235 | 797 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 593 | 749 | - | - | |
Cmo17g00235 | 797 | Gene3D | Clc chloride channel | 68 | 573 | - | - | |
Cmo17g00235 | 797 | Pfam | Voltage gated chloride channel | 130 | 552 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g01128 | Cmo17g00235 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00948 | Cmo-Chr4:4837882 | Cmo17g00235 | Cmo-Chr17:1386457 | 0 | dispersed | |
Cmo16g00824 | Cmo-Chr16:4330802 | Cmo17g00235 | Cmo-Chr17:1386457 | 0 | dispersed | |
Cmo17g00235 | Cmo-Chr17:1386457 | Cmo08g01128 | Cmo-Chr8:7198056 | 6.77E-40 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00235 | K05016 | - | csv:101215989 | 1491.09 |