Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00236 ATGTCTCGTGTTCGGAATTTCAGCTCTCATGGAGGAATGGCTAATGATGATTACTGGATCACCATGAATCGATATGATGTCAGAAACCCCCATCAGATGACAAGTAGGAGCAATTATTATGATTATGGCTATAGCAACCATTTTGAATTCTCAGGACAGTATAAAGAGCCGGTTGATAGGTCTATTTATGCGAGGCCTGATATCTCAAACTACATCAGGCCTCATAACTCTCAGTCCTTTAAAAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAGGTACCATTGGCAGGCACGGACATATGATCATGGACCTTCAATCTATAGCAATTTGGTCCATCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTGCCAGCTGTAAAAGAGATCGCTCAATAATGGAAGATGATGAGCCTTCTTTCATGTCCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATTGACACGCTACGTGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCACCTTGAGTTACCCCAGACTACCATTGGCACTGCAATGGTTCTATGCCATCGGTTTTTTGTTCGAAGATCACATGCTTGTCATGATAGATTTTTGATTGCCACTTCTGCACTCTTCCTTGCTGCAAAATCCGAGGAGACACCACGACCTTTGAACAATGTCTTGCGAGCTTCATCTGAAATTCTGCACAAACAGGATTTTAATCTCTTATCTTACAAGCTTCCTGTTGATTGGTTTGAACAATATCGTGAAAGAGTAACAGAAGCTGAGCAATTGATACTGACTACTCTAAACTTTGAACTCAACGTTCAACATCCCTATGCTCCTCTTATGTCTGTTCTTAATAAGATAGGTCTTTCACAGTCCATGTTGGTGAATCTTGCACTGAACTTGATCAGTGAAGGTAATCTTTCTGGATTGTCTAGTCTATTTAGCAAGCATGTCCTTGCAATTGTGAAAAGTAGGCTAAGGAGCTCACTCTGGCTTCAGTTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTACTGCATGTGGATTTTGCTCCTTATCAAAATATCTTCCAAGAGTTCCAAGCAACGCCTGCTATTCTCCAAGGTACCTTGAAGAACTTCTGA 1176 42.26 MSRVRNFSSHGGMANDDYWITMNRYDVRNPHQMTSRSNYYDYGYSNHFEFSGQYKEPVDRSIYARPDISNYIRPHNSQSFKRRKFSASRWEDSGRYHWQARTYDHGPSIYSNLVHPPPRSNNDVSTSASCKRDRSIMEDDEPSFMSRDEIERCSPSRKDGIDTLRETHLRYTYCAFLQSLGLHLELPQTTIGTAMVLCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASSEILHKQDFNLLSYKLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSMLVNLALNLISEGNLSGLSSLFSKHVLAIVKSRLRSSLWLQFKPHQIAAGAAYLSAKLLHVDFAPYQNIFQEFQATPAILQGTLKNF 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1397520 1404991 - CmoCh17G002360.1 Cmo17g00236 400619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00236 391 Gene3D - 133 283 - -
Cmo17g00236 391 SUPERFAMILY Cyclin-like 286 380 IPR036915 -
Cmo17g00236 391 Pfam Cyclin, N-terminal domain 144 284 IPR006671 -
Cmo17g00236 391 CDD CYCLIN 169 240 IPR013763 -
Cmo17g00236 391 SUPERFAMILY Cyclin-like 144 285 IPR036915 -
Cmo17g00236 391 SMART cyclin_7 175 277 IPR013763 -
Cmo17g00236 391 PANTHER CYCLIN 70 387 IPR043198 GO:0006357|GO:0016538
Cmo17g00236 391 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 70 387 - -
Cmo17g00236 391 Gene3D - 285 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00236 K15188 CCNT; cyclin T - csv:101216477 665.225
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01129 Cmo17g00236 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01128 Cmo-Chr8:7198056 Cmo17g00236 Cmo-Chr17:1397520 5.34E-22 dispersed
Cmo08g01129 Cmo-Chr8:7210538 Cmo17g00236 Cmo-Chr17:1397520 0 dispersed
Cmo17g00236 Cmo-Chr17:1397520 Cmo18g00515 Cmo-Chr18:3730460 4.62E-64 dispersed
Cmo17g00236 Cmo-Chr17:1397520 Cmo13g00483 Cmo-Chr13:5823952 1.56E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g467 . Blo12g00321 Bda03g00895 . Bpe04g00840 . Bma04g00793 . Cmo08g01129 Cmo17g00236 . . . . . . . . . . . . . . Cla06g00566 Cam06g0606 Cec06g0606 Cco06g0612 Clacu06g0592 Cmu06g0587 Cre06g1353 Cone14ag0837 . . . . . . . . . . . . . . . . . . Cma08g01155 Cma17g00251 Car08g01033 Car17g00225 Cpe12g00207 . Bhi12g01732 . . Lac12g2301 . . . . . . . . . . Lsi09g01335 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00236 Cmo_Chr17 FPKM 6.404125 6.585921 7.240983 6.754026 8.086739 9.156079 9.037326 3.707192 3.858861 4.396382