Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00241 ATGAATATGGCGCATTTCGACACCGACCTCCCTCCTCTCGACCACCTTCACTCCACCAGATCCCTCATCTCTGCTCTCAATTTACTCTCCCGGAATCTCCCTCTTCCTCCCGACCTCTTTGAAGCTGTTTCTTCCATTTACTCCGCTCCTCAGGATCAAGATCCCGCTGCTCTCAGTGATTCGGATGAGCTTGGAGATTCTGTTCAAGAAGATCTATTGAGTGACCTTGGAGATGCTTTGGCTAAGCAACGTTCAAATTTTGAATCTGGTTCTGGGTTGGAACAATTGAGAGAAGAACGTTATCAAGGTCAAATACAATGGCGGTTGAATGATCTAGAAGAATTACCTTCAAGTAGAGGGGAAGACTTACAGACGAAGTGCTTGCTTGAACTGTATGGATTAAAGAAAGTTTCCATATTGGCTATTAAATGGTTGCATAGCTTGAGTATTGACATTCTGTTGATGATGATAAATAGATGTGCCTGTACACATTTTCTTTTGGTACTGATTGATGATAGCCATTTCATGGCAGTTACTAGATTTACAAAAAAAGAGTACTGGCTTCAAGCAACTTGTGCATACCCAGACAAACAATTATTTGATTGGGGCATGATGCGATTGCACCGTCCACCATATGGTGTAGGAGATGCTTTTGCCATGGAAGCTGATGATCAACTGCGAAAGAAGCGGGATGCTGAGGCATGGCATGGAAGACAAAGACAACGTGCTACCAGGGCAGAAAAACTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAATGAACGATTAACAACACTTCTCGAAGAAACAAACAAACTACTTGTTAACTTGGGTGCTGCTGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATCGAGACCTTGGATGAATCTGATGTTGATTTACAGGAATTGGATTCTTCAAAGAATGCAACCCCTCAAGAACTACTCATGGATGAAGATTTAGATGCCACTGATTCTGACCGCAATTATGAAAGTGGTGATTTGCTTGAAGGACAGCGACAATATAACTCTGCCATTCATGCAATTCAGGAAAAGGTCACTGAGCAGCCTTCCATGCTACAAGGAGGAGAATTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGCTTTCATTATTCAATAACAATTTAAATGGAATATTGGCTGATGAAATGGGACTGGGAAAAACAATACAAACAATCTCATTGATTGCTTACCTCATGGAATACAAGGATGTGACTGGACCTCATTTAATAGTTGCTCCCAAGGCAGTACTTCCAAACTGGATTCATGAATTTACAACATGGGCCCCAAGTATCGCTGCTGTTCTTTACGATGGGCGTCAGGAGGAGAGAAAGGCTATAAAGGAGGAGCTATTGAGTGAAGGAAAATTTAGTGTCTTGATTACACATTATGATCTCATTATGAGAGATAAATCATTTTTGAAGAAAATACACTGGTATTATATGATTGTTGATGAAGGCCATCGGCTGAAAAATCGTGATTGTGCTCTTGCACAAACACTTGCAGGCTACCAGATCAAACGTAGACTTCTTTTAACTGGTACACCTATCCAGAACAGTTTGCAGGAATTATGGTCCCTGCTTAATTTTCTCCTGCCGCATATATTTAATTCTGTCCAGAATTTCCAGGAGTGGTTCAATGCACCATTTGCAGATCGGAGTGATGTTACACTGACAGATGAAGAAGAGCTATTGATCATTCGCCGTTTGCATCATGTTATTAGGCCATTCATATTGAGGCGAAAAAAGGACGAGGTGGAAAAGTATCTACCTGAAAAGTCACAAGTCATACTAAAATGTGATATGTCAGAATGGCAGAAAGTATACTATCAACAAGTAACTTCTATTGGCAGGGTTGACACGGGTTCGGGCAAATCGAAGTCCCTACAAAATTTAACGATGCAGCTGAGAAAGTGTTGTAATCATCCATATCTTTTTGTTTTGGGAGATTATAATATTTGGCGCAAGGAGGAGATCGTCAGAGCTTCTGGGAAATTTGAACTACTCGATCGTCTGCTCCCGAAGCTACATAGAACTGGGCATAGAGTCCTGCTTTTCTCACAAATGACTCGTCTTATGGATGTTCTTGAAATTTATCTTCAACTCCATGAGTTTAGATATCTCCGACTTGATGGTTCGACAAAAACTGAAGAAAGAGGGTCTCTAGTGAAGCAATTTAATGCCCCGGACTCCCCGTTTTTCATGTTTCTCTTGAGTACTCGGGCGGGTGGTTTAGGTTTGAACTTACAGACTGCAGATACTGTTATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAACAGGCAGAGGATCGAGCTCACCGTATCGGACAAAAGAAGGAAGTAAGGGTGTTTGTCCTGGTTAGTGTTGGATCAGTTGAAGAGGTTATCCTGGAGCGTGCAAAACAGAAGATGGGGATTGATGCCAAGGTTATCCAAGCTGGACTTTTCAACACAACTTCAACAGCTTTTGTATTATTGGTTTTCCATTCACTTCGATTCTCCCTCCATTTGTCTCTTCCAGCTCAAGACCGAAGAGAGATGTTGGAGGAGATTATGCGCAGAGGAACGAGCGCACTTGGCACTGACGTGCCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGACGAAGAATTCTGGCTTTTCGAGAAAATGGACGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGTTTGATGGAAGAACACGAGGTACCTGAGTGGGTATACTCAGTACCCGACGGTAACGAAGAGAAGAACAAGGGTTCAGAAATTCTCAGTGTCGCTGGAAAACGAAGAAGAAAGGAGGTGGTTTATGCTGATACACTGAGTGATTTGCAGTGGATGAAAGCTGTGGAGAATGGAGAAATTCCAAACCTTTCTATGAAAGCAAATAGAAGAGAGACTCCCTCACGTGAAGGCAGTGTATCAACCAGCAATATTGTCAGCTCAAGGGCAGAGGATAAGCTGATAGAATACGATGATAACGTGCCTGTAACGAGCGAGGGAACAAGCGAAGACAATTCAGGTTTAGAACCAACCCCAAAGAGACCAAAGTCCGAAGGAGGGGTAAGTATTAGAAAACACGAATTCTTGGCCGAATCAGGAAGCGAATGGAGTCGATGCGTAATAACATGGAAAACACACAAGAAGAAGCGATCGAGCTATGTCCAAGGCTCCACAGATTCTAGACATAACTCCAATGGAAGAGGAAATGGATGGGCTTGA 3300 42.48 MNMAHFDTDLPPLDHLHSTRSLISALNLLSRNLPLPPDLFEAVSSIYSAPQDQDPAALSDSDELGDSVQEDLLSDLGDALAKQRSNFESGSGLEQLREERYQGQIQWRLNDLEELPSSRGEDLQTKCLLELYGLKKVSILAIKWLHSLSIDILLMMINRCACTHFLLVLIDDSHFMAVTRFTKKEYWLQATCAYPDKQLFDWGMMRLHRPPYGVGDAFAMEADDQLRKKRDAEAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIETLDESDVDLQELDSSKNATPQELLMDEDLDATDSDRNYESGDLLEGQRQYNSAIHAIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIAAVLYDGRQEERKAIKEELLSEGKFSVLITHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRDCALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSEWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFVLGDYNIWRKEEIVRASGKFELLDRLLPKLHRTGHRVLLFSQMTRLMDVLEIYLQLHEFRYLRLDGSTKTEERGSLVKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAFVLLVFHSLRFSLHLSLPAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDGNEEKNKGSEILSVAGKRRRKEVVYADTLSDLQWMKAVENGEIPNLSMKANRRETPSREGSVSTSNIVSSRAEDKLIEYDDNVPVTSEGTSEDNSGLEPTPKRPKSEGGVSIRKHEFLAESGSEWSRCVITWKTHKKKRSSYVQGSTDSRHNSNGRGNGWA 1099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1421492 1428857 - CmoCh17G002410.1 Cmo17g00241 400624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00241 1099 Pfam Helicase conserved C-terminal domain 686 799 IPR001650 -
Cmo17g00241 1099 Pfam SNF2-related domain 381 666 IPR000330 GO:0005524|GO:0140658
Cmo17g00241 1099 PANTHER SNF2/RAD54 HELICASE FAMILY 15 233 - -
Cmo17g00241 1099 MobiDBLite consensus disorder prediction 1072 1099 - -
Cmo17g00241 1099 MobiDBLite consensus disorder prediction 311 345 - -
Cmo17g00241 1099 Gene3D - 612 830 IPR027417 -
Cmo17g00241 1099 Pfam Snf2-ATP coupling, chromatin remodelling complex 912 973 IPR029295 GO:0042393
Cmo17g00241 1099 SMART helicmild6 715 799 IPR001650 -
Cmo17g00241 1099 MobiDBLite consensus disorder prediction 995 1009 - -
Cmo17g00241 1099 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 555 IPR014001 -
Cmo17g00241 1099 PANTHER ATP-DEPENDENT HELICASE BRM 15 233 - -
Cmo17g00241 1099 PANTHER ATP-DEPENDENT HELICASE BRM 236 1037 - -
Cmo17g00241 1099 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 850 IPR001650 -
Cmo17g00241 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 602 IPR027417 -
Cmo17g00241 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 839 IPR027417 -
Cmo17g00241 1099 MobiDBLite consensus disorder prediction 1083 1099 - -
Cmo17g00241 1099 MobiDBLite consensus disorder prediction 984 1052 - -
Cmo17g00241 1099 PANTHER SNF2/RAD54 HELICASE FAMILY 236 1037 - -
Cmo17g00241 1099 CDD SF2_C_SNF 677 810 - -
Cmo17g00241 1099 SMART ultradead3 374 566 IPR014001 -
Cmo17g00241 1099 Gene3D - 369 611 IPR038718 -
Cmo17g00241 1099 SMART SnAC_2 911 973 IPR029295 GO:0042393
Cmo17g00241 1099 Coils Coil 909 929 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00241 - - - csv:101222943 1846.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01132 Cmo17g00241 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00846 Cmo-Chr14:4458425 Cmo17g00241 Cmo-Chr17:1421492 5.87E-73 dispersed
Cmo14g01693 Cmo-Chr14:13286293 Cmo17g00241 Cmo-Chr17:1421492 0 dispersed
Cmo14g02109 Cmo-Chr14:15268252 Cmo17g00241 Cmo-Chr17:1421492 1.75E-157 dispersed
Cmo16g00712 Cmo-Chr16:3550543 Cmo17g00241 Cmo-Chr17:1421492 2.29E-127 dispersed
Cmo17g00241 Cmo-Chr17:1421492 Cmo20g00106 Cmo-Chr20:536746 2.21E-113 dispersed
Cmo04g00527 Cmo-Chr4:2617554 Cmo17g00241 Cmo-Chr17:1421492 1.70E-70 transposed
Cmo04g01046 Cmo-Chr4:5211336 Cmo17g00241 Cmo-Chr17:1421492 8.60E-88 transposed
Cmo06g01583 Cmo-Chr6:11115170 Cmo17g00241 Cmo-Chr17:1421492 7.75E-33 transposed
Cmo08g01181 Cmo-Chr8:7509730 Cmo17g00241 Cmo-Chr17:1421492 9.31E-162 transposed
Cmo17g00241 Cmo-Chr17:1421492 Cmo08g01132 Cmo-Chr8:7230775 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11370 PF00176 SNF2_N 1.60E-69 CL0023 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00241 Cmo_Chr17 FPKM 25.089087 27.472368 38.111332 37.228096 3.138747 2.584228 2.836598 3.272515 2.446907 2.680599