Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00242 ATGTGGGAGTGCGACCATTTCAAAGCGGCCTTCTCGCGAAAACCCCAAGGCCAGGCAAATCTGTTCTCTCACAGGGGAGAGAGAGCGATGACGATGGCGATTCCGGGGAGCATTGTCGTCCTCCTTCTCCTTATGTTGCTTCTCCTCCTCCTCATCCTCCTCATCCTCCTTCTCATTGCCTGCAAGCCATGGCGCTTCTTTTCCTTCTCTCGTTCTCGCACCATCAAGGTTCCTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGATGACACTCAAAGCCAAACCAATGAGCTTCCTAGAGATTATGATTTGGAGGGTGCACTCCAAACTGATGGACATTTTCGGTCCTCAAGATTGTACGGGCTGATTCATAAACAAAGATCGCCATCTTCATCGCCCCATTTAAGTCAGGGTGATAGATCGGTTCCAGATGTAGTTCCCGATCATTTAGAAATTATTTCAGTTGGTCAGACACTTAAACGAACTTACTTCGCAAACCAGATTCCAGAAATTCAAAAGCATTCAAAATTGAGCCCAGAATGTGATCAACTCCATGAAATTTCAAGTCAAGATGCTTCACATGAAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGGGTGCGTTATTCAATACATTCTGCAGACACGTCTAGGCTTCCGTTGACTCTTGGAAGAGTACCACCTAGTGATTTACAGCTGAAGGATTCCGAAGTCTCAGGGAAGCACGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTCGACTTGGGCAGCTTAAATGGGACTTTATTAAATTCTCAACCTATCAACAATCCTGATTCTGGAAGTAGACATTGGGGTGATCCAATTGAGCTTGTGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATAACATCTCAGATTGAGAATCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAAAAGCATGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTGCTGGGGTTGATCAGGTTTTGGTGCTGGCAATTTGTTTTGGGCTCTTTGGTATCTGCGATGGACATAGTGGAGTAGGGGCCGCCAAATCTGCTAGCGAGATTCTTCCTGCGAAGGTTGCCACAATTCTATCTGATCCACTGAAAAGGGAGAGGGTAGTATCCCTTCGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTCTTAGTATGGACTGATAGTGATGAAAATTACTTTGTGCAATGTGCGAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTCGTGGGAAGCGGATGAAGATGACAGAAGATCACAGAATAACTAGCATCTCAGAAAGACAACGACTAGAACAAGCAGGAGAACCATTGAAAGACGGGGAGACACGTTTATGTGGTAACGGAAAATTCGAAAAGAGAAATGAGTACAATTTATTCCTAAAATATCTGAATCCTTTTCTTAAAATACCTAAATCATTAACACGTCTTGCCTCCCTCCGTGACTCAGGCTTGAACCTTGCAAGGGTGCTCGGTGACAAGTTCCTTAAACAACAAGACCCTCGTTTCAGTTCCGAACCTTATATCAGTGAAGTCGTCCATATAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGCGATGGCTTTTGGGATGTGATTAGCACGAAGAAGGCAATCCAGCTGGTGCATCAGGCCAGGGAGAGATACTCCGGAGGTGCAGAAAACTCAGCGGAGAAGGTCGCCAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTCATAGAATCACTTGTAAAGTTGAACCATAA 1953 44.39 MWECDHFKAAFSRKPQGQANLFSHRGERAMTMAIPGSIVVLLLLMLLLLLLILLILLLIACKPWRFFSFSRSRTIKVPDLERPLVSDAADDTQSQTNELPRDYDLEGALQTDGHFRSSRLYGLIHKQRSPSSSPHLSQGDRSVPDVVPDHLEIISVGQTLKRTYFANQIPEIQKHSKLSPECDQLHEISSQDASHERSYLTLEVTSGPSRGVRYSIHSADTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGDPIELVSGDVITLGTTSKVYVHITSQIENHIPFGVGLASDPMALRRGGKKHAMEDVCYYQWPLAGVDQVLVLAICFGLFGICDGHSGVGAAKSASEILPAKVATILSDPLKRERVVSLRDASDVLREAFSQTEACMNHYYEGCTATVLLVWTDSDENYFVQCANVGDSACVLNVRGKRMKMTEDHRITSISERQRLEQAGEPLKDGETRLCGNGKFEKRNEYNLFLKYLNPFLKIPKSLTRLASLRDSGLNLARVLGDKFLKQQDPRFSSEPYISEVVHIDQGSKAFAVMASDGFWDVISTKKAIQLVHQARERYSGGAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSHRITCKVEP 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1429561 1437554 - CmoCh17G002420.1 Cmo17g00242 400625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00242 650 CDD FHA 200 308 IPR000253 GO:0005515
Cmo17g00242 650 SMART FHA_2 225 277 IPR000253 GO:0005515
Cmo17g00242 650 CDD PP2Cc 334 638 IPR001932 -
Cmo17g00242 650 Pfam FHA domain 227 302 IPR000253 GO:0005515
Cmo17g00242 650 SMART PP2C_4 316 636 IPR001932 -
Cmo17g00242 650 PANTHER PROTEIN PHOSPHATASE 2C 533 649 IPR015655 GO:0004722|GO:0006470
Cmo17g00242 650 PANTHER PROTEIN PHOSPHATASE 2C 67 499 IPR015655 GO:0004722|GO:0006470
Cmo17g00242 650 Gene3D - 329 644 IPR036457 -
Cmo17g00242 650 SUPERFAMILY SMAD/FHA domain 199 310 IPR008984 GO:0005515
Cmo17g00242 650 PANTHER PROTEIN PHOSPHATASE 2C 70 533 649 - -
Cmo17g00242 650 PANTHER PROTEIN PHOSPHATASE 2C 70 67 499 - -
Cmo17g00242 650 ProSiteProfiles PPM-type phosphatase domain profile. 322 638 IPR001932 -
Cmo17g00242 650 SUPERFAMILY PP2C-like 335 638 IPR036457 -
Cmo17g00242 650 Gene3D - 194 328 - -
Cmo17g00242 650 ProSiteProfiles Forkhead-associated (FHA) domain profile. 226 277 IPR000253 GO:0005515
Cmo17g00242 650 Pfam Protein phosphatase 2C 334 631 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01133 Cmo17g00242 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00242 Cmo-Chr17:1429561 Cmo01g01732 Cmo-Chr1:12942300 1.54E-15 dispersed
Cmo17g00242 Cmo-Chr17:1429561 Cmo08g01133 Cmo-Chr8:7240122 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00242 K01090 - csv:101217195 965.296