Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00245 ATGCAAGATTTCTTCGGATCTGTTCGTCGTTCCTTGGTATTTCTAGCGCCCGACGGTGACGACGGTGGGAAGTTCGGTGGCCTCGTCGAGAGGATTGGCTCCAGCATTCGAAAATCTCGAAATGGACTGTTTTCTAAGCATTCAGTGCGGGCTTTGCCACCGGTTGCGAAAGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTATTGCAATCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCACAGGCTCACATCCGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAGAACCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAATCTTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTTTGTTAGGGAAATTTGGGTCTTTCCCTGAGTCTGTTATGAAAACCTACACGAAGCAGCTATTATTGGGACTTGAGTACCTTCATAAGAACGGCATTATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGCATTAAACTTGCTGATTTTGGTGCATCCAAGAAAGTAGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCGTATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACGGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCACATAGGAAATACTAAGTCCCATCCACCTATTCCTGAGCATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTCATGCAGCCGTCCGTGCCTCTTCTTTGGAATCTGGGAAACAGATGGCTGGTGCTAGGCTGAATTCTAATGATATAACAAAGTCTATAATCCAACGTTCAACCTGTGAGGGCTTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGAGGTGCGGTCCAACTGGGGATCGAGCAATTCTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGCTAGTTCATCGATAAAGTACAAATCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCCATGTGTGAACCCACTGATGACTGGGCATGTAAATTGGATGAGAGCTCAGAGCTGAGAGGCAATTTAATGGAATTGTCTGGTATTCAAACTGGCCAGGAATCTACTAGCAAGGGAAATGACTTCACTTTTCCATGTGGTCAATCAACAGCTGAGGATGATGAAGAGGTTACAGACTCGAAGATTCAAGCCTTCCTGGATGAGAAGGCTTTGGAACTGAAGAAGCTACAGACACCTTTATATGAAGAGTTCCGCAGCACAGTTAATGCAGCTAATGCTTTAGGAGCAGGTGGCACTGAGAATAGCAAGAGTGTATCTAATTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGATGGTAACTGTTCCAGCCGTCAGAGCCGTGTAAAACAAGCCAGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCTCAAATTGGGGAATGGAACAAATTGCTTCATACACAGCCAGAGTCTTGCACACCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAGCGAGGTTAG 1905 44.04 MQDFFGSVRRSLVFLAPDGDDGGKFGGLVERIGSSIRKSRNGLFSKHSVRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELIAIKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTAREESSLNILLEFVPGGSISSLLGKFGSFPESVMKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPHAAVRASSLESGKQMAGARLNSNDITKSIIQRSTCEGLKDICEMGSLRCSSVFSGNYEVRSNWGSSNSEDDMCQIDDKDLFASSSIKYKSIISSNDLNKSFNPMCEPTDDWACKLDESSELRGNLMELSGIQTGQESTSKGNDFTFPCGQSTAEDDEEVTDSKIQAFLDEKALELKKLQTPLYEEFRSTVNAANALGAGGTENSKSVSNFLKLPPKCGSPSKLRGKRLSSIDDGNCSSRQSRVKQASILQDRALQEIQSPQIGEWNKLLHTQPESCTPSFSERQRKWKEELEEELKRKRG 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1450940 1454640 - CmoCh17G002450.1 Cmo17g00245 400628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00245 634 CDD STKc_MAPKKK 65 327 - -
Cmo17g00245 634 PANTHER MAP KINASE KINASE KINASE 47 554 - -
Cmo17g00245 634 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cmo17g00245 634 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00245 634 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00245 634 Gene3D Transferase(Phosphotransferase) domain 1 65 365 - -
Cmo17g00245 634 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00245 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cmo17g00245 634 Coils Coil 98 125 - -
Cmo17g00245 634 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 47 554 - -
Cmo17g00245 634 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00267 Cmo-Chr1:1218983 Cmo17g00245 Cmo-Chr17:1450940 1.38E-74 dispersed
Cmo05g01151 Cmo-Chr5:9116620 Cmo17g00245 Cmo-Chr17:1450940 0 dispersed
Cmo14g00988 Cmo-Chr14:5299175 Cmo17g00245 Cmo-Chr17:1450940 1.99E-74 dispersed
Cmo17g00245 Cmo-Chr17:1450940 Cmo03g01082 Cmo-Chr3:8095928 1.50E-89 dispersed
Cmo17g00245 Cmo-Chr17:1450940 Cmo12g01088 Cmo-Chr12:9974555 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74994 PF00069 Pkinase 2.90E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00245 - K20606 csv:101217427 1100.5