Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00246 ATGGGGCTTGATCTGGAGTCTCTGTCGGAGGCTACATCCGGAGCCATCGGATCTCTGGTGAGTACCACCGTTTTGTATCCTCTAGATACTTGCAAGACTAAATATCAAGCGGAGAATCAGGCTAGCCATCAGCGGAAGTACAGAAACATTTCTGATGTGCTATGGGAAGCTGTTTCAACTGGTCACGTGGGCTCGTTATATCAGGGCATTGGCACAAAGAACTTCCAGTCCTTTATTTCATCGTTCATCTACTTCTATGGATACAGCTTCTTAAAGAGAATGTATTTGAAGAGAAGTGGGAATAAAAAGATTGGAACAAAGGCAAATCTGATCGTTGCTGCAGCAGCTGGGGCTTGTACTGTCGTATTGACGCAGCCTTTGGATACAGCATCGTCTCGTATGCAGACAAGCGAGTTCGGGAAGTCCAAAGGATTTTGGAAGACGCTCGCCGAGGGTACTTGGAGTGAAGCGTTTGATGGTCTCGGAATATCCCTTCTTTTGACATCAAACCCATCAATTCAGTACACCGTGTTTGATCAACTGAAACAAAGGTTACTCAGGACTCAGCTGACACGTGCATCGGGTATCGAGTCGTCCCCGGAAGCTCTCTCGGCCTTCTCAGCTTTCGTGCTTGGCGCCCTCTCGAAATGTGTTGCTACAATCTTGACATACCCTGCTATCAGGTGTAAGGTCGTGATCCAGGCTGCAGAATCGGATGAAGAAAGGAACGAAGACAAACAGCACGGCGATAAGAAAACCGTGTCGGGTGCTCTTAATACGATCTGGAAAAGAGAAGGCTTGCTGGGATTCTTCAAAGGATTACAAGCACAAATACTGAAGACTGTGTTGAGCTCTGCGTTGCTTTTGATGATAAAGGAGAAGGTTGCAAAGACCTCTTGGATCATATTGATTGCACTTAGAAGGTATCTCTTTGTAACCAATACAAGATTAAAGGGTGCTTAA 963 46.0 MGLDLESLSEATSGAIGSLVSTTVLYPLDTCKTKYQAENQASHQRKYRNISDVLWEAVSTGHVGSLYQGIGTKNFQSFISSFIYFYGYSFLKRMYLKRSGNKKIGTKANLIVAAAAGACTVVLTQPLDTASSRMQTSEFGKSKGFWKTLAEGTWSEAFDGLGISLLLTSNPSIQYTVFDQLKQRLLRTQLTRASGIESSPEALSAFSAFVLGALSKCVATILTYPAIRCKVVIQAAESDEERNEDKQHGDKKTVSGALNTIWKREGLLGFFKGLQAQILKTVLSSALLLMIKEKVAKTSWIILIALRRYLFVTNTRLKGA 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1455714 1459367 + CmoCh17G002460.1 Cmo17g00246 400629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00246 320 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 319 - -
Cmo17g00246 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Cmo17g00246 320 Gene3D Mitochondrial carrier domain 3 299 IPR023395 -
Cmo17g00246 320 Pfam Mitochondrial carrier protein 7 98 IPR018108 -
Cmo17g00246 320 Pfam Mitochondrial carrier protein 104 186 IPR018108 -
Cmo17g00246 320 Pfam Mitochondrial carrier protein 203 297 IPR018108 -
Cmo17g00246 320 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 319 IPR045900 GO:0005347|GO:0006635|GO:0015217
Cmo17g00246 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 298 IPR018108 -
Cmo17g00246 320 SUPERFAMILY Mitochondrial carrier 8 294 IPR023395 -
Cmo17g00246 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00246 - - - csv:101217653 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00165 Cmo-Chr4:847119 Cmo17g00246 Cmo-Chr17:1455714 2.40E-32 dispersed
Cmo05g01155 Cmo-Chr5:9146107 Cmo17g00246 Cmo-Chr17:1455714 6.11E-164 dispersed
Cmo17g00246 Cmo-Chr17:1455714 Cmo03g00741 Cmo-Chr3:6282873 1.74E-24 dispersed
Cmo17g00246 Cmo-Chr17:1455714 Cmo12g01091 Cmo-Chr12:9999505 9.40E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g454 . . . . . . Bma04g01199 . . Cmo17g00246 . . . . . . . . . . . . . . Cla06g00557 Cam06g0598 Cec06g0596 Cco06g0603 Clacu06g0584 Cmu06g0579 Cre06g1345 Cone14ag0831 . . . . . . . . . . . . . . . . . . . Cma17g00259 . Car17g00233 Cpe12g00215 . Bhi12g01818 . . . . . . . . . . . . . Lsi09g01342 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001531 4 2 2 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 3 2 2 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00246 Cmo_Chr17 FPKM 21.697239 25.972889 25.222015 27.118921 30.534712 31.079832 29.58489 28.429457 25.937023 22.901762