Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00259 ATGAAATTTTCCTTGTCGGCGAGTTGCAAGCAAGTTGCGGCGGAGCCACCGCTAGTGAACTTACAAGGCACAAACATACTCAATTTGAAGCCATTTTTCCGGCAAAAAGACAAATTAGTGTTTGTAATGGGAGCGACCGGCACCGGAAAATCCCGATTGGCAATTGAGTTAGCCAACCGTTTCCCAGCTGAGATTATAAACTCTGACAAGATCCAAATCTACAAAGGACTTGAAATCCTCACCAATAAGGTCACTGAGAAAGAATGTTGTGGGGTCCCACATCACCTCCTTGGAATCGCTGATCCAAACTCGAACTTCACCGCCACGGACTTCCGCCGCCATGCCTCGTTGGCTATCAACTCCATCGTCGGAAAACACCGCCTCCCCATTGTCGCCGGTGGCTCCAACTCCTTCATCGAATCTCTTGTTGACGACGAGGCGGAGTTTCGTTACCGATACGATTGTTGCTTCCTATGGGTCGATGTGTCGTTACCGGTTCTCCACTCATTCGTGTCAGACCGTGTCGATCGAATGTTGGACAATGGGTTAGTCAACGAAGTACGGAATTTGTTTGACCCAAAAGAAAATGATTACACTCGTGGGATTCGACGCGCCATTGGAGTGCCTGAACTCGACGCGTTTCTACACGCCGAGATGGATTCGGCCACCGACGACAAAGCCCGATCACGGATTCTTAATGCGGCGATTTTGAAGATTAAAGAAAATTCAATAAAATTGGCGCTCCGACAACGGCAAAAAATCCACCGCCTCCAAAGCAAATGGGGATGGAATCTCCACCGTATCGATGCCACCGAAGTCTTCTTACAGCACGATGGTGGAGAATATTCCGACCATGCTTGGGAGGCGCTCGTGGCGGAGCCGAGCTCCATAATCGTAGACCAATTCCTCTGTGAAAATAGTTGTTCCTTAGCCGGCAAAATCCCAATGGCGGTCGTTGCCCGCACCACTCGATGA 975 49.64 MKFSLSASCKQVAAEPPLVNLQGTNILNLKPFFRQKDKLVFVMGATGTGKSRLAIELANRFPAEIINSDKIQIYKGLEILTNKVTEKECCGVPHHLLGIADPNSNFTATDFRRHASLAINSIVGKHRLPIVAGGSNSFIESLVDDEAEFRYRYDCCFLWVDVSLPVLHSFVSDRVDRMLDNGLVNEVRNLFDPKENDYTRGIRRAIGVPELDAFLHAEMDSATDDKARSRILNAAILKIKENSIKLALRQRQKIHRLQSKWGWNLHRIDATEVFLQHDGGEYSDHAWEALVAEPSSIIVDQFLCENSCSLAGKIPMAVVARTTR 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1532508 1533482 + CmoCh17G002590.1 Cmo17g00259 400642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00259 324 Pfam IPP transferase 72 145 - -
Cmo17g00259 324 Pfam IPP transferase 149 252 - -
Cmo17g00259 324 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 308 IPR039657 -
Cmo17g00259 324 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 308 - -
Cmo17g00259 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 198 IPR027417 -
Cmo17g00259 324 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 265 - -
Cmo17g00259 324 Gene3D - 36 303 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00259 K10760 IPT; adenylate dimethylallyltransferase (cytokinin synthase) [EC:2.5.1.27 2.5.1.112] - csv:101215150 501.516
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01441 Cmo17g00259 CCT
Cmo06g01441 Cmo17g00259 ECH
Cmo08g01143 Cmo17g00259 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01318 Cmo-Chr11:9113880 Cmo17g00259 Cmo-Chr17:1532508 6.86E-90 dispersed
Cmo17g00259 Cmo-Chr17:1532508 Cmo19g00659 Cmo-Chr19:7091543 3.38E-89 dispersed
Cmo14g01718 Cmo-Chr14:13438487 Cmo17g00259 Cmo-Chr17:1532508 9.52E-117 wgd
Cmo17g00259 Cmo-Chr17:1532508 Cmo17g01140 Cmo-Chr17:9271490 5.53E-105 wgd
Cmo17g00259 Cmo-Chr17:1532508 Cmo19g00049 Cmo-Chr19:287146 3.02E-106 wgd
Cmo17g00259 Cmo-Chr17:1532508 Cmo06g01441 Cmo-Chr6:10436722 1.75E-125 wgd
Cmo17g00259 Cmo-Chr17:1532508 Cmo08g01143 Cmo-Chr8:7303649 0 wgd
Cmo17g00259 Cmo-Chr17:1532508 Cmo08g00355 Cmo-Chr8:2196219 2.32E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g427 . . . . . Bpe14g01324 . . Cmo08g01143 Cmo17g00259 Cma06g01439 Cma14g01673 Car06g01241 Car14g01507 Sed02g1277 Cpe08g00236 Cpe03g01412 Bhi01g00864 Tan10g0896 Cmetu11g1902 Lac12g2331 . . Lcy11g1500 Cla06g00544 Cam06g0587 Cec06g0584 Cco06g0592 Clacu06g0574 Cmu06g0568 Cre06g1334 . . Cone7ag0211 Cone4ag0202 Lsi05g01461 . Chy11g01432 Cme06g00651 . Blo07g00204 . . . . . Bma06g01537 . Cmo06g01441 . Cma08g01170 Cma17g00272 Car08g01048 Car17g00247 Cpe12g00225 Cpe17g00124 Bhi12g01797 . . . . . . Cla05g00583 Cam05g0641 Cec05g0650 Cco05g0645 Clacu05g0635 Cmu05g0603 Cre05g0672 Lsi09g01358 Csa03g01377 Chy06g00620 Cme11g01937
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002613 0 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 0 2 2 2 2 2 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00259 Cmo_Chr17 FPKM 10.695438 10.59379 15.423384 15.307441 11.486973 11.022829 10.914524 39.696678 40.702328 40.115856