Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00265 ATGAAAATCAGAGAGCAATATCGTGCGAAGGTAGAAGGCCTACAAAAAAGGTACAATAATTATCGTATAACTAGCAAGGTCCTCCACCGAGCACTGTGTACATTAAAAAATGCGAAATTGATTGGTGTTTGGATGTGCATTTGGAACACGATTACTTGTATATCACGGTTTCGTTCGTCTATAGACGTGGATTTCTTCACTGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTGTGCTCTGCATATGATACTCACATTGGGGAGAAAGTTGCAATTAAGAAGATCAACGACATCTTTGAGCATGTCTCCGATGCAACTCGGATTCTTCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTATTACCTCCATCTAGAAGAGAATTCAAGGACATTTATGTCGTGTTTGAGCTCATGGAATCTGATCTACACCAAGTTATCAAAGCAAACGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATATATACACACAGCTAATGTCTTCCACCGGGACCTAAAACCCAAAAATATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGCGACTTTGGTCTGGCAAGAGTTGCTTTTAATGACACCCCTACTGCTATTTTCTGGACAGATTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTGTGTGGTTCCTTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGTTGCATCTTTGCGGAGCTTTTAACTGGAAAACCAATTTTCCCTGGAAAGAACGTCGTCCACCAATTAGACTTGATGACAGATTTTCTGGGAACCCCAAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGCAGTATGCGAAAGAAGAAGCCAGTTCCTTTCTCCCAGAAGTTTCCTCACGCAGATCCACTCGCACTTCGCTTGTTGGAAAGAATGTTAGCTTTCGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTAACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAGATTCTCGAGTACCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCTGAACCTACTGGTTTCATGTATCCAAGGGCTTTTAATGCTGTTGACCATTTTAAGAAGCAATTTGCCTTCCTTGAAGAACACTATGGAAATGGTGCAACTGTTGCTCCTCCTGAAAGGCAGCATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACACGGTGCAGAACTCGGCACAAGTTGCAAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGACTAGAGTTCCTATTCAAGTTCCTCAGTCTATTCAAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCAACGTGTTACGATACAACTGCGGAGCAACAGCAGCAGCAGCAGTGGCACCAGAAGTTCTGGAACAGCGGAGGATGATCAGAAACCCGTCCATTCCACCACCATACGCCGCTACTAACTGTTCGTATCCCAGACGAAACCCATCCTGTAAAAATGAAAGGACTGATGATGAAGCCATTGAAGGTTCAAATGGGTTGCAGCCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTATAAGTTACAAAAGTTGACTAATCCCAATCCACTAAGATTGCTGTTTGAAGATATTTGGAACCTGAAAATCGAAACCTTAATCAGTAGCTGA 1947 42.42 MKIREQYRAKVEGLQKRYNNYRITSKVLHRALCTLKNAKLIGVWMCIWNTITCISRFRSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHIGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPIFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPRAFNAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNTVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLTRVPIQVPQSIQGNGARPGKVVGNVLRYNCGATAAAAVAPEVLEQRRMIRNPSIPPPYAATNCSYPRRNPSCKNERTDDEAIEGSNGLQPKPQYIARKVAAAQGGPGNNWYKLQKLTNPNPLRLLFEDIWNLKIETLISS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1582906 1590155 + CmoCh17G002650.1 Cmo17g00265 400648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00265 648 ProSitePatterns Protein kinases ATP-binding region signature. 81 105 IPR017441 GO:0005524
Cmo17g00265 648 Pfam Protein kinase domain 75 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00265 648 ProSiteProfiles Protein kinase domain profile. 75 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00265 648 Coils Coil 4 24 - -
Cmo17g00265 648 MobiDBLite consensus disorder prediction 561 597 - -
Cmo17g00265 648 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 59 532 - -
Cmo17g00265 648 Gene3D Phosphorylase Kinase; domain 1 90 411 - -
Cmo17g00265 648 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 59 532 - -
Cmo17g00265 648 CDD STKc_TDY_MAPK 74 411 - -
Cmo17g00265 648 ProSitePatterns MAP kinase signature. 110 213 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo17g00265 648 SMART serkin_6 75 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00265 648 Gene3D Transferase(Phosphotransferase) domain 1 161 389 - -
Cmo17g00265 648 SUPERFAMILY Protein kinase-like (PK-like) 72 370 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01148 Cmo17g00265 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00311 Cmo-Chr11:1499676 Cmo17g00265 Cmo-Chr17:1582906 0 dispersed
Cmo11g02038 Cmo-Chr11:13860920 Cmo17g00265 Cmo-Chr17:1582906 0 dispersed
Cmo13g01034 Cmo-Chr13:8708506 Cmo17g00265 Cmo-Chr17:1582906 0 dispersed
Cmo17g00265 Cmo-Chr17:1582906 Cmo19g01097 Cmo-Chr19:9403201 0 dispersed
Cmo17g00265 Cmo-Chr17:1582906 Cmo08g01148 Cmo-Chr8:7341665 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74995 PF00069 Pkinase 3.80E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00265 - K04371 csv:101216364 1081.63