Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00267 ATGGAGCAGCTGATCAACTTCATCATTCGTCCACCGAGAGCTGAATATGACCCGAACAATGATTTACTAGAAGATGAGTTCACGCTTCGAGGAAAATTGTATCAAAGGAAGGATCTGGAGATTAAAAACACTCGGGGAGATGTACTTCAGTGTAGTCATTACTTGCCTATTGTTAGTCCTGAAGGAAAGCCTCTACCCTGTGTAATTTACTGCCATGGTAACAGTGGGTGTCGAGCAGATGCCAGTGAGGCTGCCATAATATTACTGCCTTCTAACATCACCGTGTTTGCTCTTGATTTTTCTGGTTCTGGACTTTCTGGGGGTGAGCATGTTACATTGGGGTGGAATGAAAAGGATGATCTGAAAGCCGTGGTTGAGTATTTGCGAGCAGATGGAAACGTCTCTTTAATTGGCTTATGGGGCCGTTCTATGGGTGCTGTTACCAGCCTAATGTATGGGGCTGAGAATCCTTCAATTGCAGGGATGGTTCTGGACAGTCCTTTCTCTGATCTGGTTGAGCTAATGATGGAACTTGTAGAAACCTATAAGTTTCGTTTACCTAAATTCACGGTGAAGTTTGCTATTCAATACATGCGAAGGGCTATCCAGAAAAAGGCAAAATTTGACATTATGGACCTCAACACCATTAAGGTGGCAAAATCTTGCTTTGTACCAGTGTTAATCGGGCATGCCATTGACGATGACTTCATACGGCCTCATCACTCAGACCAAATACATGATGCCTATGTGAGTCGTAGCTCTGCGCTTCCTCTTACAAGATTTAAAGAAGTTTTCCTTTTGGTGCCTTCTTCCGCAGGGTGTAGCTCTGGGGACAAAAACATTATCAAGTTCGATGGTGATCACAATTCTCCTCGCCCTCAATTTTACTTCGATTCTATAAATATTTTCTTCCACAATGTTTTGCAACCCCCAGAGGATGAAATAGGGGATATTTATATCAACACCATGCCATCCTACTTCAGTAACAAGGATTATTGGAGACCGATGCAAGAAGCGGGCCCAAACCATGATGTACCAACTAATAGTACGGAAGGTGCTATTAAAGAACTCCGTTCAAAAAGATCTATGAGTCGGACAGAGGTAATGTTATATGCGCACTCTATCGCCTTAAATGAAGATCAAAGCAACTTTTTGGTTCCTGCCGATCTTCCTTCTGGAGATCATCAATCCCTATCTCAGGATCAGAGTACGAGTAATGACACGGACTTGTCATCTTCAAATATGATTAGTTTTGAATTATCGAATGGCCATCCTTACGAAACCAATGTTCCAAATTTGATGGACGATGATCAGTATGTCGAATATCCTCTTGATGACTTGGCAGGGTTCCCATGCAGTGTAGAGGAGGAAGAAAGGATGCTCATGGAAGCAGTGATGGAATCGTTGAAGGATTTCAAAATGAAAAACGCTCAAGAAGAAGAGCAAGCTTCGAGTGTTGTATGTACCGACACGAAGGACGTTTTACAGAAAGACGAATGTGGAATTTCACGACTAGACCATTGTGGAGTGCTGCATCCAGAAGCCACATCCACTTCAAATGACCATTTTTCTCAGTTTAAAGCAGAATCTGCTTCAACTTCAGAAGAGTACAGTATATCTATTAAACCAGAATCTACTTCAGTAGTTCGAGATTCGAATTCGGTATCTGATCGCTCGTGTTCCGATAAAAGCGAATCTTCTATAGGGGTGCCTGCACCTGCAGGAACTGAGAGTGCAGGGGCTTCCTCTTGTAGTAATACACCTGCAAGTAGCCAACTTTCAGCTGAAGCCGATTTGTCAGCCAACACGAAGGCGACCGTAACTGTTGTCCGAAATCCCGCAACCCATATTATGGATGGTTTGATTCGTCGCTGGGATCTCAATTTCTTCCGAAACAATCAGAACCGATGA 1911 43.17 MEQLINFIIRPPRAEYDPNNDLLEDEFTLRGKLYQRKDLEIKNTRGDVLQCSHYLPIVSPEGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFALDFSGSGLSGGEHVTLGWNEKDDLKAVVEYLRADGNVSLIGLWGRSMGAVTSLMYGAENPSIAGMVLDSPFSDLVELMMELVETYKFRLPKFTVKFAIQYMRRAIQKKAKFDIMDLNTIKVAKSCFVPVLIGHAIDDDFIRPHHSDQIHDAYVSRSSALPLTRFKEVFLLVPSSAGCSSGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEDEIGDIYINTMPSYFSNKDYWRPMQEAGPNHDVPTNSTEGAIKELRSKRSMSRTEVMLYAHSIALNEDQSNFLVPADLPSGDHQSLSQDQSTSNDTDLSSSNMISFELSNGHPYETNVPNLMDDDQYVEYPLDDLAGFPCSVEEEERMLMEAVMESLKDFKMKNAQEEEQASSVVCTDTKDVLQKDECGISRLDHCGVLHPEATSTSNDHFSQFKAESASTSEEYSISIKPESTSVVRDSNSVSDRSCSDKSESSIGVPAPAGTESAGASSCSNTPASSQLSAEADLSANTKATVTVVRNPATHIMDGLIRRWDLNFFRNNQNR 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1598551 1610200 - CmoCh17G002670.1 Cmo17g00267 400650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00267 636 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 251 - -
Cmo17g00267 636 MobiDBLite consensus disorder prediction 534 566 - -
Cmo17g00267 636 Gene3D alpha/beta hydrolase 10 265 IPR029058 -
Cmo17g00267 636 Coils Coil 462 482 - -
Cmo17g00267 636 SUPERFAMILY alpha/beta-Hydrolases 11 314 IPR029058 -
Cmo17g00267 636 MobiDBLite consensus disorder prediction 386 415 - -
Cmo17g00267 636 PANTHER ALPHA/BETA-HYDROLASE 277 631 - -
Cmo17g00267 636 MobiDBLite consensus disorder prediction 393 415 - -
Cmo17g00267 636 MobiDBLite consensus disorder prediction 534 590 - -
Cmo17g00267 636 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 277 631 - -
Cmo17g00267 636 PANTHER ALPHA/BETA-HYDROLASE 1 251 - -
Cmo17g00267 636 Pfam Serine aminopeptidase, S33 64 175 IPR022742 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00267 - - - csv:101215845 1041.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01150 Cmo17g00267 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00641 Cmo-Chr3:5856524 Cmo17g00267 Cmo-Chr17:1598551 9.10E-146 dispersed
Cmo07g00369 Cmo-Chr7:1683083 Cmo17g00267 Cmo-Chr17:1598551 5.29E-149 dispersed
Cmo17g00267 Cmo-Chr17:1598551 Cmo11g01645 Cmo-Chr11:11687040 5.26E-08 dispersed
Cmo17g00267 Cmo-Chr17:1598551 Cmo08g01150 Cmo-Chr8:7351850 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g413 . . . . . . . . Cmo08g01150 Cmo17g00267 . . . . . . . . . . . . . . Cla06g00535 Cam06g0577 Cec06g0574 Cco06g0582 Clacu06g0564 Cmu06g0558 Cre06g1326 Cone14ag0810 . Cone7ag0206 . . . Chy11g01440 . . . . . . . . . . . . Cma08g01179 Cma17g00280 Car08g01055 Car17g00255 Cpe12g00233 Cpe17g00117 Bhi12g01785 . . Lac12g2354 . . Lcy13g0224 . . . . . . . Lsi09g01367 . . Cme11g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001541 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 4 3 2 2 4 2 2 2 3 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00267 Cmo_Chr17 FPKM 21.172504 24.500542 30.796875 27.005638 79.195877 74.533073 76.76416 219.552704 227.190323 213.905945