Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00271 ATGCCAACAAATTCCGGTCTGAAATTTCAGCGACGAGAGATTGAAAGTTCATCGTACTCGATGCGTGGCCATGATTGGATCAATACGGTTCTTCCTGACGAACTAATCGTTGAGATCTTCCGGTACCTTGACTCGAAGCTGAGTCGAGATGCTTGTTCTCTCGTCTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGAACCACTCTGCGAATTGGCGCAACGGGTAGCCCCGACCTTTTTGTTCAGCTCCTTGCTCGTCGTTTCGTCAATGTAAAAAATGTCCACATTGACGAGCGCTTGGCGATATCTCTCCCCCTCCATTCAGGAAGAAGACGGCGCAATGAGGTCATGCGCTTGCCATTTAAGTCACATCATGCAATTCATAATACCGGGACTGAAGGTGCGGCAGAGTCTTCTTGCCTGTCTGATGCTGGGCTAATTGCCCTCTCCGTAGGTTTTCCGAACCTTGAGAAACTGAGTTTAATTTGGTGCTCGAATATTTCAAGTCAGGGCTTGACATCCCTTGCTGAGAAGTGCAAATTTTTGAAGTCACTGGATCTACAGGGTTGCTATGTTGGGGATAGAGGTGTAGCTGCAGTTGGGGTATTCTGTAAACTACTCAAAGATGTAAATTTTCGTTTTTGTGAAGGGCTGACTGACGTTGGTTTGGTTGAATTATCCCGTGGCTGTGGGAAATCATTAAAATCATTTGGTATGGCTGCTTGTGCCAAGATAACGGATGTCGCACTAGAAGCTGTAGGCATGCACTGTAAATATCTGGAGTCCATATCGCTAGATTCAGAAGTTATCCATGACAAAGGGGTGCTTTCTCTTGCCCAAGGATGCACACTTCTTAAAGTTTTAAAGCTACAGTGTACAAATGTCACAGACGAAGCTTTGGTAGCTGTAGGCTCCTTGTGTCCTTTTCTGGAACTATTGGCTTTATACAGTTTTCAGGAATTTACAGACAAGGGATTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAGAATCTCACTCTAAGTGATTGTTATTACCTGAGTGATATAGGCTTGGAAGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAATGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGGAAAATCTTGCCCCCAGCTCACTGAATTGGCTTTGCTGTATTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAATTGCAAGTTCTTACAAGCTCTCCATTTGGTAGATTGCTCGAAAATTGGAGACGAGGCAATATGCGGTATAGCCAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGCTATGAGATTGGGAATGCAGGAATTATAGCTGTTGGAGAGAATTGCAATCTCCTCATAGATTTGAGCCTCAGATTTTGTGATAGGGTTGGCGATGAGGCGCTTATTGCCATCGGCAAGGGATGTTCCCTTCATCAACTGAATGTTAGTGGGTGCCACCGCATTGGTGACGTCGGAATCGCAGCCATTGCTAGAGGTTGTCCCCAATTGTGTTTCTTGGACGTAAGCGTTCTTGAGAACTTGGGAGATATGGCAATGGCTGAGTTAGGAGAAGGCTGCCCCTTGCTTGAGGACGTGGTACTGTCTCACTGTCACCAGATAACTGATGCAGGTATAATGCATTTAGTGAAGGGGTGCTCGATGCTCGAATCGTGTCACATGGTCTATTGTCCCAGCATTACCGCAGCTGGGGTCGCCACTGTCGTTTCTAGCTGCCCCAACATAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGTGAGAGAACGAAACGACGTGCGGGCTCAGTTATTTCCTACCTTTGCGTGGACCTCTAA 1878 46.11 MPTNSGLKFQRREIESSSYSMRGHDWINTVLPDELIVEIFRYLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVKNVHIDERLAISLPLHSGRRRRNEVMRLPFKSHHAIHNTGTEGAAESSCLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCKFLKSLDLQGCYVGDRGVAAVGVFCKLLKDVNFRFCEGLTDVGLVELSRGCGKSLKSFGMAACAKITDVALEAVGMHCKYLESISLDSEVIHDKGVLSLAQGCTLLKVLKLQCTNVTDEALVAVGSLCPFLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYYLSDIGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIGKSCPQLTELALLYCQKIVNSGLLGIGQNCKFLQALHLVDCSKIGDEAICGIAKGCRNLKKLHIRRCYEIGNAGIIAVGENCNLLIDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDVGIAAIARGCPQLCFLDVSVLENLGDMAMAELGEGCPLLEDVVLSHCHQITDAGIMHLVKGCSMLESCHMVYCPSITAAGVATVVSSCPNIKKILVEKWKVSERTKRRAGSVISYLCVDL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1620433 1625293 + CmoCh17G002710.1 Cmo17g00271 400654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00271 625 SUPERFAMILY RNI-like 357 606 - -
Cmo17g00271 625 Gene3D Ribonuclease Inhibitor 278 372 IPR032675 -
Cmo17g00271 625 Gene3D - 27 67 - -
Cmo17g00271 625 Gene3D Ribonuclease Inhibitor 135 201 IPR032675 -
Cmo17g00271 625 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 205 444 - -
Cmo17g00271 625 SMART LRR_CC_2 180 204 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 490 514 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 154 179 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 258 282 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 205 230 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 360 385 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 386 411 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 232 257 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 438 463 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 464 489 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 541 566 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 308 333 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 412 437 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 567 592 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 283 307 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 334 359 IPR006553 -
Cmo17g00271 625 SMART LRR_CC_2 515 540 IPR006553 -
Cmo17g00271 625 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 205 444 - -
Cmo17g00271 625 SUPERFAMILY RNI-like 141 398 - -
Cmo17g00271 625 SUPERFAMILY F-box domain 29 62 IPR036047 GO:0005515
Cmo17g00271 625 Gene3D Ribonuclease Inhibitor 203 270 IPR032675 -
Cmo17g00271 625 SMART fbox_2 31 72 IPR001810 GO:0005515
Cmo17g00271 625 Gene3D Ribonuclease Inhibitor 373 625 IPR032675 -
Cmo17g00271 625 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 354 613 - -
Cmo17g00271 625 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 140 346 - -
Cmo17g00271 625 Pfam Leucine Rich repeat 490 512 IPR001611 GO:0005515
Cmo17g00271 625 Pfam Leucine Rich repeat 179 200 IPR001611 GO:0005515
Cmo17g00271 625 Pfam Leucine Rich repeat 438 460 IPR001611 GO:0005515
Cmo17g00271 625 Pfam Leucine Rich repeat 541 563 IPR001611 GO:0005515
Cmo17g00271 625 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 354 613 - -
Cmo17g00271 625 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 140 346 - -
Cmo17g00271 625 Pfam F-box 31 68 IPR041567 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00271 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1092.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01154 Cmo17g00271 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01810 Cmo-Chr1:13290894 Cmo17g00271 Cmo-Chr17:1620433 1.28E-07 dispersed
Cmo04g00364 Cmo-Chr4:1765060 Cmo17g00271 Cmo-Chr17:1620433 9.51E-07 dispersed
Cmo04g01335 Cmo-Chr4:6811567 Cmo17g00271 Cmo-Chr17:1620433 3.21E-08 dispersed
Cmo05g01042 Cmo-Chr5:8435146 Cmo17g00271 Cmo-Chr17:1620433 5.46E-06 dispersed
Cmo09g00469 Cmo-Chr9:2105356 Cmo17g00271 Cmo-Chr17:1620433 1.05E-06 dispersed
Cmo12g00287 Cmo-Chr12:1823603 Cmo17g00271 Cmo-Chr17:1620433 6.00E-17 dispersed
Cmo12g01232 Cmo-Chr12:10988981 Cmo17g00271 Cmo-Chr17:1620433 8.06E-15 dispersed
Cmo17g00271 Cmo-Chr17:1620433 Cmo20g00346 Cmo-Chr20:1693377 1.26E-08 dispersed
Cmo17g00855 Cmo-Chr17:7895632 Cmo17g00271 Cmo-Chr17:1620433 1.20E-14 dispersed
Cmo19g01056 Cmo-Chr19:9168021 Cmo17g00271 Cmo-Chr17:1620433 5.23E-07 dispersed
Cmo20g00979 Cmo-Chr20:5467238 Cmo17g00271 Cmo-Chr17:1620433 1.14E-15 dispersed
Cmo01g01178 Cmo-Chr1:9593221 Cmo17g00271 Cmo-Chr17:1620433 5.54E-06 transposed
Cmo10g00792 Cmo-Chr10:3680673 Cmo17g00271 Cmo-Chr17:1620433 2.46E-11 transposed
Cmo11g01665 Cmo-Chr11:11814946 Cmo17g00271 Cmo-Chr17:1620433 2.29E-16 transposed
Cmo17g00271 Cmo-Chr17:1620433 Cmo08g01154 Cmo-Chr8:7374345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00271 Cmo_Chr17 FPKM 7.552769 6.093887 12.657489 11.699235 11.08469 10.825826 9.509068 9.04164 10.421007 11.375624