Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00274 ATGGGTTGTATACACACAAAATGTTGCTGTCGCTACCCAAAATCATTGGTTGGAGAATCCCAAGACTTTCATCAAGAAGATAAGAACACAGTGATCGAAAGATCATTGGAGTTCATTCCTGTTGCTTCGCACAACTATCACTTGGAATACTTGGTGCTGTCTCGGCGTGGGTTCTACCCTGAATCCCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAGCATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAAGCTAATAGAAAAGCTTTGTAATGATCCCAAATTGTTGGATAATCCTGTACAAGCTTATAATTCAGCATTTTTGTGTACAAATGATGAGCTGCATACAAGTGAAATTGATGATTCAATGAGTGGAACAACTGCTATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCCAATGTGGGCGATTCAAGAGCTGTAATTGCAGTAAAGGAAGGGAACCGTGTCCTTGCCAAGGACTTGTCAAACGATCAAACACCATTTAGAAAGGATGAGTATGAGAGAGTTAGGCTTTGTGGGGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGGCTTATGGATCCTGATATTCAGTGCTGGGGCGACGAAGAGAGCCAGGGCGGCGACCCGCCTCGACTCTGGGTTCAAAATGGTTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGAGATAGTACTGCAGAGAAGATTGGTGTAATTGCTGTTCCTGAGGTTTTAGTTCTTCAGCTTAAGGCTAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCGAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCAGCCGAGTCCTATAAACTATGGATGGAACATGAAAATCGAACTGATGATATCACGATCATTATTGTTCATATAAAAGGCTTGTCTAATGTATGA 1038 41.62 MGCIHTKCCCRYPKSLVGESQDFHQEDKNTVIERSLEFIPVASHNYHLEYLVLSRRGFYPESPDKENQDSFCIRTSIQGNPNAHFFGVFDGHGQFGMQCSNFVKDKLIEKLCNDPKLLDNPVQAYNSAFLCTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNRVLAKDLSNDQTPFRKDEYERVRLCGARVLSVDQVEGLMDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVIAVPEVLVLQLKANHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIKGLSNV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1648265 1650207 + CmoCh17G002740.1 Cmo17g00274 400657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00274 345 Gene3D - 42 341 IPR036457 -
Cmo17g00274 345 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 33 344 - -
Cmo17g00274 345 SMART PP2C_4 52 337 IPR001932 -
Cmo17g00274 345 ProSiteProfiles PPM-type phosphatase domain profile. 49 339 IPR001932 -
Cmo17g00274 345 SUPERFAMILY PP2C-like 41 341 IPR036457 -
Cmo17g00274 345 CDD PP2Cc 65 339 IPR001932 -
Cmo17g00274 345 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Cmo17g00274 345 Pfam Protein phosphatase 2C 78 318 IPR001932 -
Cmo17g00274 345 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 33 344 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01709 Cmo17g00274 CCT
Cmo08g01158 Cmo17g00274 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00091 Cmo-Chr1:416133 Cmo17g00274 Cmo-Chr17:1648265 0 dispersed
Cmo10g00684 Cmo-Chr10:3120320 Cmo17g00274 Cmo-Chr17:1648265 4.15E-142 dispersed
Cmo11g00639 Cmo-Chr11:3071263 Cmo17g00274 Cmo-Chr17:1648265 5.13E-139 dispersed
Cmo17g00274 Cmo-Chr17:1648265 Cmo03g00330 Cmo-Chr3:4439194 3.26E-30 dispersed
Cmo14g01709 Cmo-Chr14:13411004 Cmo17g00274 Cmo-Chr17:1648265 0 wgd
Cmo17g00274 Cmo-Chr17:1648265 Cmo08g01158 Cmo-Chr8:7400661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00274 - - csv:101217134 661.373