Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00278 ATGGAAGAGAGAGAAACGAGGGAGGAGGAATCCGGTGTTGCCAATTTTGGACTTCCCGAGGAAGTACTGGAAGTTTTACCGTCGGATCCATTCGAGCTGCTCGATGTGGCTCGGAGAATCACCTCCATTGCTCTCTCGACGCGTGTTTCTGTTCTCGAATCCGAATCCTCCGCTCTCCATGCTCAGCTTTCCGAGAAGGATGCTCTCATTGCAGAGCTGCAATCGCAGATCGAATCCCTCGATGCCGCTTTATTCGAGAAATCCGAAATTCTCGCCCGCGCCGATCCGGAAAAGGAGGCGTTGTTGCAAGAGAACGCGTCGCTTTCGAACACCGTGAAGAAGCTTACTCGAGATGTCTCGAAGTTGGAGGTCTTTAGAAAGACGCTTATGCAGTCCCTACACGAGGAAGAGAACAATACTGGAGGTTCAGAGGCTGCTGTCAAAATAGAGAGTCAGCAAAGTTTGCCCTCTACTCCGCTCGTTGGAGAAGATAATCTGACATTGCCGCTATCTAAAAACTCATCAATCCAGAGCAACACTTCTGAAACAGTGAATTCGGTAAAAGAAGAGCATGAGGGAGATGTGACCACTTCAAGGCCTCGTATATCAAACAGACTTCTGTTAGCATCACAGACTAGCACACCTCGGCTATCACCTCCCGGTTCTCCTCCCATTACTTCTGCATCTGTGTCTCCTACGAGAAGGTCTAATCCTGTTTCCCCAAAGCGTCATGCGATGTCATTCTCTGTCTCAAGGGGTGTGTTCGATAGGACCTCTATGTATTCACCCGTCGGCAATCACAGCTCAAGCCCTCAAGCAGGAACTCATACTGGTTTGTTCCTAAAACTCTCCTCCTTGCAGGGCGGACGAACTCGAGTTGATGGGAAAGAATTCTTCCGCCAAGTGAGGAATACTGCATTTCGTACGTGCCTGCGAATACTGCATTTGTTCAATATAAATGTTTCTAATTTGCCCGTCTTCTGTAGGAGCCGGTTGTCGTATGAGCAGTTCAGTTCATTCTTAACCAGTGTCAAAGAGTTGAATGCCCATAAGCAAACGAAAGAGGAGACCCTTAGAAAGGCTGATGAGATATTTGGGCCGGATAACAAGGACCTGTTCACTATATTTGAAGGAGCACAGTTCATTCCTCTTTGCCTTATTATGCGTAGTAAGACGCCCGAGCGAACGTTGCAGCGATTGAAGATGTTGTTGCAAGTTTCAACCGCAAAGAAATTGGATCAGCAAGACTCTGCGAATATGGTTGAATGCAATCCGACTGTGCTTCAAACCGGAAGGTTCAATGATTCAGGCGATATTGCTTGTCAAGATCAATCAAAAGATCAGACAGATCAAGCTGTGGGGACTCCCAAATTAGGGAGCAGAAGACAGCGTGGATTCTCCGACTCTTTTGCTTCTCATGAGTTGAGATTATTAGAATTGGAAGATGAAGCCAAAGACGAATCATCTCCTAGAGGGGTGCTCGAGGACTGCTTGAGAAGCTTAGATTCTGAAACAACTACTTCCCGGGACAGCACTTCCGATTGGGTAGTTAATCCGGACTCCAGAAATCCAAGCCATTGGAAAGGTTTCTTTCGCTTGCTGAAGAAAGGACCTCAAATGCGATTTCAGACCTTTCCTCCTCTAGCTGTTCCAAAAATCGCCAAAAGAAAGAGCAAAAGAATTAGAGAGGATATGCTTCCGGCAGTATCACCAGTGAGGGACTCCTCTATACAGTCCGAGTTTTGCTACTTCAAATCTTCTTGGAAGAATTTCACACTTTCAGAGCTTGAAGCTGCTAGCAATAACTTCAACCCAGAAAACTTGATTGGTGAGGGTGGTTATTCTGAAGTTTACAAAGGGCAGCTGGAAGATGGGCAACTTGTCGCGATCAAGCGGCTTAATAGAGGCACCCAAGAAGAGATGACTGCAGATTTCTTGTCTGAGCTTGGAATTATCGTTCATGTTGATCATCCTAATGTTGCGAGCGTAATTGGGTACCTTCCCCCTGAGTTCTTTATGCATGGCATTGTTGATGAAAAAACCGATGTCTATGCTTATGGAGTACTTTTATTGGAACTCATTACCGGACGGCAAGCATTGAATAGCTCACAGCAAAGCCTTGTGATGTGGGCTAAACCTCTACTTCCTAAAGATAATCTCAAGGATCTTGTTGATCCATGTCTTCTCGACGTATTTGACACCGAACAAATGAAGCTTATGACATCGGTAGCTTCAATGTGCATAAATCAATCTTCAATTCAACGGCCAGAGATGTGCGAGATTGTTGAGATCCTGAAAGGAAATGGAGCTGCTTTGGAACTTTTACGACGACAGAAATCTATATTTCAGAGGACATACTCCGAGGAACTTTTAGATGCAGAAGAGTATAATTCTACCAAGTATTTAAGTGATATGGATCGACATTTAGAGATTGTTTTAGGAGCTTGTGATATTGATGTTTAG 2463 45.23 MEERETREEESGVANFGLPEEVLEVLPSDPFELLDVARRITSIALSTRVSVLESESSALHAQLSEKDALIAELQSQIESLDAALFEKSEILARADPEKEALLQENASLSNTVKKLTRDVSKLEVFRKTLMQSLHEEENNTGGSEAAVKIESQQSLPSTPLVGEDNLTLPLSKNSSIQSNTSETVNSVKEEHEGDVTTSRPRISNRLLLASQTSTPRLSPPGSPPITSASVSPTRRSNPVSPKRHAMSFSVSRGVFDRTSMYSPVGNHSSSPQAGTHTGLFLKLSSLQGGRTRVDGKEFFRQVRNTAFRTCLRILHLFNINVSNLPVFCRSRLSYEQFSSFLTSVKELNAHKQTKEETLRKADEIFGPDNKDLFTIFEGAQFIPLCLIMRSKTPERTLQRLKMLLQVSTAKKLDQQDSANMVECNPTVLQTGRFNDSGDIACQDQSKDQTDQAVGTPKLGSRRQRGFSDSFASHELRLLELEDEAKDESSPRGVLEDCLRSLDSETTTSRDSTSDWVVNPDSRNPSHWKGFFRLLKKGPQMRFQTFPPLAVPKIAKRKSKRIREDMLPAVSPVRDSSIQSEFCYFKSSWKNFTLSELEAASNNFNPENLIGEGGYSEVYKGQLEDGQLVAIKRLNRGTQEEMTADFLSELGIIVHVDHPNVASVIGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALNSSQQSLVMWAKPLLPKDNLKDLVDPCLLDVFDTEQMKLMTSVASMCINQSSIQRPEMCEIVEILKGNGAALELLRRQKSIFQRTYSEELLDAEEYNSTKYLSDMDRHLEIVLGACDIDV 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1663183 1675024 + CmoCh17G002780.1 Cmo17g00278 400661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00278 820 PANTHER BNAC01G41860D PROTEIN 8 378 - -
Cmo17g00278 820 MobiDBLite consensus disorder prediction 227 244 - -
Cmo17g00278 820 Coils Coil 98 118 - -
Cmo17g00278 820 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524
Cmo17g00278 820 Gene3D Transferase(Phosphotransferase) domain 1 667 798 - -
Cmo17g00278 820 SUPERFAMILY Protein kinase-like (PK-like) 593 777 IPR011009 -
Cmo17g00278 820 Gene3D Phosphorylase Kinase; domain 1 568 666 - -
Cmo17g00278 820 ProSiteProfiles Protein kinase domain profile. 603 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00278 820 Pfam Protein tyrosine and serine/threonine kinase 607 666 IPR001245 GO:0004672|GO:0006468
Cmo17g00278 820 MobiDBLite consensus disorder prediction 199 216 - -
Cmo17g00278 820 Coils Coil 63 83 - -
Cmo17g00278 820 MobiDBLite consensus disorder prediction 441 465 - -
Cmo17g00278 820 MobiDBLite consensus disorder prediction 167 184 - -
Cmo17g00278 820 MobiDBLite consensus disorder prediction 153 245 - -
Cmo17g00278 820 MobiDBLite consensus disorder prediction 441 456 - -
Cmo17g00278 820 Coils Coil 344 364 - -
Cmo17g00278 820 PANTHER - 8 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00278 - - - cmax:111499057 605.134
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01451 Cmo17g00278 CCT
Cmo08g01161 Cmo17g00278 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00278 Cmo-Chr17:1663183 Cmo12g01109 Cmo-Chr12:10113367 5.28E-38 dispersed
Cmo20g00296 Cmo-Chr20:1440303 Cmo17g00278 Cmo-Chr17:1663183 3.70E-17 dispersed
Cmo17g00278 Cmo-Chr17:1663183 Cmo06g01451 Cmo-Chr6:10484471 1.76E-99 wgd
Cmo17g00278 Cmo-Chr17:1663183 Cmo08g01161 Cmo-Chr8:7408621 7.31E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g391 . . . . . . . . Cmo08g01161 Cmo17g00278 . . Car06g01252 . . Cpe08g00225 . . . . . . . . Cla06g00525 Cam06g0564 Cec06g0564 Cco06g0571 Clacu06g0552 Cmu06g0548 Cre06g1317 Cone14ag0802 Cone15ag0802 . . Lsi05g01484 . Chy11g01450 Cme06g00674 . . . . Bpe05g00758 . . . . Cmo06g01451 . Cma08g01189 Cma17g00289 Car08g01065 Car17g00265 Cpe12g00241 Cpe17g00109 Bhi12g01766 . . . . . . . . . . . . . Lsi09g01379 Csa03g01399 Chy06g00642 Cme11g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002295 1 3 1 0 1 2 3 2 2 2 1 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 7 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74996 PF07714 PK_Tyr_Ser-Thr 1.80E-07 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00278 Cmo_Chr17 FPKM 25.90921 26.207258 26.922253 28.216942 35.32975 34.198273 34.633236 21.222477 19.806547 19.654585