Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00289 ATGGCGTCGGTTCAGCCACTTATGGATGGGATTTCTGAGATTACTCAAGAGGAAGATGTTGAGAATGTAAAACCAGTTAATGAACAGATATCAGATACTCGGCATAGCGGTAGACGCCCCGATATCTCACTTCAAGTACCTTCGAGACCGATGGGTGGCATAAAAGGTTTACTGCAATCTCTAGGTTCCAACAATGGTGTTTTATCTCCTGTAAGCTTTTTAAGAGCTTTAAGCTTTAAGAGAAAAGGCATTGCTGCTGAAGGTGAGACGAGTTCGCTCCTATGTTCGGACCCGAGTACAACTGCTGAGAGTCCGGTAATGGCTATCGCATCATCAGCCTTTTCTTGGACAAAGTCCTCGTCCCTCCCAGTTACTCCAGCTTCAAACTTGTCCCCGTCGATACCCCGCCCCGCCACAACTAATGAAAAGCCAGTTCCACGTAAAGTAGCAGCACGTGCAGTTTCGAGGTCTCTATCCATGCCCGGTAGACATATCGTTATAATACGATCTACATCTTTTGCTTCCCCTAAGGCAAATTCAGAGGCCAGTAGCAGTTCTGATCAAAATGGTTCTGTTACCTTAGAGAATGGCGATGAAGAAATTCCTGAAGAGGAAGCTGTTTGTAGAATATGTTATGATCCATGTGAAGAAGAAAACACTCTCAAAATGGAATGTAGTTGCAAAGGAGATCTTAGGCTTGTACATAAAGATTGTGCAATAAAATGGTTTAGTATAAGAGGAAAAAAGGAGTGTGAAGTCTGTAGGCAGGTGGTAAAGAATTTACCTGTCACGCTACTTCGTATTCCGACCACCGCACAACAGGACGGAAGACAGTTGCATAATCAACTGACTTTCCGTTCACAGACGATAAGCGCTTGGCAGGACTTTGTGGTGCTTCTTTTAATGAGCACAATATGCTACTTTTTCTTCCTTCAGCAGCTTCTGATTCACGACTTGAAGACTCGGGCGATCAATTATGCTGCGCCTTTTGCGTTGTTGTTTGGTATCATGTCGTCGATATTCTCGGTCATTCTCGCAATCAAGGAATACATATGGACTTATGCAGCTCTTGAATTTGCACTTGTAGCTATCATTCTTCATCTATTATATACTTTGCTGAAACTGAAGGCCATATATGCCATTTTGCTGTCTGCAATCTTGGGTTTTGGTATGGCTATGAGCCTAAACTCTCTGTATATTCATTACTACATTTGGCGAGTTCGAGTCGTACAGAATCACAATCTAATCCCACTTTACACGAACATCTTCAGTCATCTAATGAGTAAAGATCATATCATCTTCATCTCGAATCAAGATCTAGAAGTTTTGAATTGCTTAAAAAATAGACAATATCAATGGATGAGCTTGAGCTACTGTCGATAA 1383 42.08 MASVQPLMDGISEITQEEDVENVKPVNEQISDTRHSGRRPDISLQVPSRPMGGIKGLLQSLGSNNGVLSPVSFLRALSFKRKGIAAEGETSSLLCSDPSTTAESPVMAIASSAFSWTKSSSLPVTPASNLSPSIPRPATTNEKPVPRKVAARAVSRSLSMPGRHIVIIRSTSFASPKANSEASSSSDQNGSVTLENGDEEIPEEEAVCRICYDPCEEENTLKMECSCKGDLRLVHKDCAIKWFSIRGKKECEVCRQVVKNLPVTLLRIPTTAQQDGRQLHNQLTFRSQTISAWQDFVVLLLMSTICYFFFLQQLLIHDLKTRAINYAAPFALLFGIMSSIFSVILAIKEYIWTYAALEFALVAIILHLLYTLLKLKAIYAILLSAILGFGMAMSLNSLYIHYYIWRVRVVQNHNLIPLYTNIFSHLMSKDHIIFISNQDLEVLNCLKNRQYQWMSLSYCR 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1744669 1751182 + CmoCh17G002890.1 Cmo17g00289 400672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00289 460 Pfam RING-variant domain 208 254 IPR011016 GO:0008270
Cmo17g00289 460 MobiDBLite consensus disorder prediction 1 48 - -
Cmo17g00289 460 SMART ringv_2 207 255 IPR011016 GO:0008270
Cmo17g00289 460 MobiDBLite consensus disorder prediction 176 195 - -
Cmo17g00289 460 MobiDBLite consensus disorder prediction 176 200 - -
Cmo17g00289 460 ProSiteProfiles Zinc finger RING-CH-type profile. 200 261 IPR011016 GO:0008270
Cmo17g00289 460 CDD RING_CH-C4HC3_MARCH 208 255 - -
Cmo17g00289 460 SUPERFAMILY RING/U-box 204 258 - -
Cmo17g00289 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 262 IPR013083 -
Cmo17g00289 460 PANTHER ZINC FINGER PROTEIN 8 414 - -
Cmo17g00289 460 MobiDBLite consensus disorder prediction 125 148 - -
Cmo17g00289 460 PANTHER OS02G0165000 PROTEIN 8 414 - -
Cmo17g00289 460 ProSiteProfiles Zinc finger RING-type profile. 208 255 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00289 - - - mcha:111009750 592.038
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01171 Cmo17g00289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01375 Cmo-Chr11:9605842 Cmo17g00289 Cmo-Chr17:1744669 5.95E-13 dispersed
Cmo13g00182 Cmo-Chr13:1218439 Cmo17g00289 Cmo-Chr17:1744669 9.35E-61 dispersed
Cmo17g00289 Cmo-Chr17:1744669 Cmo20g00517 Cmo-Chr20:2467263 1.71E-60 dispersed
Cmo19g00615 Cmo-Chr19:6761852 Cmo17g00289 Cmo-Chr17:1744669 6.98E-13 dispersed
Cmo17g00289 Cmo-Chr17:1744669 Cmo08g01171 Cmo-Chr8:7452009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g377 . . . . . . . . Cmo08g01171 Cmo17g00289 . . . . . . . . . . . . . . Cla06g00513 Cam06g0551 Cec06g0551 Cco06g0558 Clacu06g0537 Cmu06g0537 Cre06g1305 Cone14ag0794 Cone15ag0795 . . . . Chy11g01462 . . . . . . . . . . . . Cma08g01198 Cma17g00301 Car08g01074 Car17g00276 Cpe12g00253 Cpe17g00101 Bhi12g01749 . . . . . . . . . . . . . Lsi09g01389 . . Cme11g01968
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005455 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00289 Cmo_Chr17 FPKM 7.17837 7.667376 14.734566 14.32471 25.452871 28.912886 22.762337 10.432715 11.058111 9.541345