Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00296 ATGAGTTCCCGCTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACATGGAACACAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAGAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATGATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGGTGAGTGAGTATTTCGCGCTTGTTGTTAATTTGGCGGATTTTAGGTATATTTGGTATGGTTTTGAACTGATTGGAAATTTGAATGTTGTTGCTATAATGATGTGTTTTACTCTTAAGAATGTTTTGAATGTTGTTTTTGTGTACGCAAAAATTGATCCTGCGATCAATGCATTTTCAGCCTGGTCCATACTCCTAGATTTTACTTTTTACCGCCCGACCTACACGGATTACGATATCTCGTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCACCATTGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCGCCACATTCCGAAGCCAAGATCACGAAAAGTACGAAAAGCACGAAAAGCACGCAAGGTCTCTCCTCAAGGCCAGTGCATCTGAATGAAGTTTCACCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTGTCATGGACGCCATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCCGAGCTTTCTTTGAGGAATATCGAATTGATTCCATCATTCCCGTTTTGGAGGTTGAATTCGGATACGGATAGCTTGATGTCTAAACCTTTGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCACGAGCGGCTTCAATGCTGGTGTTTAAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCATCTAGGGAAGACGAACAACCTACAGACGATCATGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGGTTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTGACACCAAGATTGCTTGTGAATGA 1239 46.81 MSSRSRPVVQDSSAPEPRDDMEHSGWANMPSELLRDIFMRIEESEASWPLRRSVVACAGVCRSWRMISKEIVLTLEVSGRLTFPISLKQVSEYFALVVNLADFRYIWYGFELIGNLNVVAIMMCFTLKNVLNVVFVYAKIDPAINAFSAWSILLDFTFYRPTYTDYDISLCAEDSSKGSDTTIVGKLRSNFLGTKFTIFDKQPPHSEAKITKSTKSTKSTQGLSSRPVHLNEVSPNVPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGVAPTLAELSLRNIELIPSFPFWRLNSDTDSLMSKPLDSQEDGILMLRNKTPRWHERLQCWCLNFHGRVTIASVKNFQLVASREDEQPTDDHDTIILQFGKVGKGLFTMDYRYPISAFLAFAICLSSIDTKIACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1778045 1781084 + CmoCh17G002960.1 Cmo17g00296 400679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00296 412 Pfam F-box domain 26 74 IPR001810 GO:0005515
Cmo17g00296 412 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Cmo17g00296 412 MobiDBLite consensus disorder prediction 206 230 - -
Cmo17g00296 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 158 412 - -
Cmo17g00296 412 SUPERFAMILY Tubby C-terminal domain-like 158 412 IPR025659 -
Cmo17g00296 412 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Cmo17g00296 412 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Cmo17g00296 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Cmo17g00296 412 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cmo17g00296 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Cmo17g00296 412 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Cmo17g00296 412 PANTHER TUBBY-RELATED 158 412 - -
Cmo17g00296 412 SUPERFAMILY F-box domain 21 69 IPR036047 GO:0005515
Cmo17g00296 412 Gene3D Tubby Protein; Chain A 151 412 IPR025659 -
Cmo17g00296 412 MobiDBLite consensus disorder prediction 1 26 - -
Cmo17g00296 412 MobiDBLite consensus disorder prediction 213 230 - -
Cmo17g00296 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 3 90 - -
Cmo17g00296 412 PANTHER TUBBY-RELATED 3 90 - -
Cmo17g00296 412 Pfam Tub family 160 407 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01689 Cmo17g00296 CCT
Cmo14g01689 Cmo17g00296 ECH
Cmo08g01177 Cmo17g00296 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00296 Cmo-Chr17:1778045 Cmo04g00542 Cmo-Chr4:2688163 1.50E-113 dispersed
Cmo14g01689 Cmo-Chr14:13253699 Cmo17g00296 Cmo-Chr17:1778045 1.45E-153 wgd
Cmo17g00296 Cmo-Chr17:1778045 Cmo08g01177 Cmo-Chr8:7495224 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11372 PF01167 Tub 1.60E-80 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00296 K19600 - csv:101203437 487.648