Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00301 ATGTTTGCTTCCAGTATGGATACTGTGCGGGACACAGCTAGAAATGCAGGAACGTTGTTAATCCCAATGCGGTTTGTCTGGCCGTATGGGGGAAGAAGTGTATTTCTCAGCGGTTCTTTTACCAGGTGGTCGGAGCTTGTTCCTATGACGCCTATGGAGGGCTGTCCTACTGTTTTTCAGGCTATTTACAGCTTAACCCCTGGATATCACCAGTATAAATTTTTTGTTGATGGAGAATGGCGGCACGATGAGCAGCAGACTTGTATTTCTGGTGAATATGGGGTTGTAAACACTGTTCTCTTGGCTACAGAGCCTAGTTATGCTGCTCCACTTGCCAATCCAGAGATGGCCCCTGGATCTAGCATGGATGTGGATAATGATGCCGTCCGTCGCTTGGTCCGAATAAATGATGGACGATTGTCAGAGGCTGTGCATAGTATATCAGAGGCTGATCTGCAGTGCTCCCGTCACCGCATATCTGCATTCTTGTCCACACATACTGTTTACGAGTTGCTCCCGGAGTCAGGCAAGGGTATCCCAACAGCTCCTCTTTGGGATTTCAGCAAGGGGCAATTTGTTGGAGTTCTCAGTGCTTCAGATTTTATTTTGATATTAAAAGAACTTGGGAAGCGTGGCTCAAACCTGACAGAGGAGGAGCTTGAAACACATACTATATCTGCTTGGAAAGAGGGTAAAGCATATTTGAATGGTCGAGTGGATGGGCAAGGAAGATTCTTGTCAAGACAGTTCATTCACGCTGAACCGTTTGATAATTTGAAAGATGTTGCTTTAAAGATCTTGCAAAATCAGGTGGCTACAGTTCCCATAATTCATTCATCTGCAGAAGATGGATCGTTTCCACAATTGTTGCATCTTTCTTCACTTTCTGGAATACTAAAATGTATCTGCAGGTACTTTAGGCATTGTTCCAGCCTGTTGCCTGTGCTCCAACTGCCAATTTTTGCAATTCCAGTTGGAACATGGGTCCCAAAAATTGGAGAATCGAATAGAAGACCATTAGCTATGTTGAGACCTAGTGCTTCCCTTAGCTCAGCGTTAAACTTACTGATTCAAGCTCAAGTTAGTTCGATACCCATAGTTGACGACAACGATTCATTGCTGGATGTATATTGCCGAAGTGATATAACAGCTCTTGCAAAGGACAGAGCTTATACACACATTAATCTTGATGAAATGACCATTCATCAGGCATTGCAACTTGGACAAGATTCTTTCTCTCTTTACGAGCCACGAAGTCAACGATGTCAGATGTGTTTGCGATCCGACTCGTTGCATAAAGTAATGGATCGTTTGGCAAACCCAGGTGTTCGACGGCTTGTAATCGTGGAAGCTGGCAGCAAACGAGTAGAAGGGATTATTTCGCTAAGCGATGTTTTCAAGTTCTTGCTTGGGCAATTGACTCCTAGCATATCCCATATTTGTACCTTGCATGGCGAGGGCTGCTGGGTGGGGCAAGGCTTGATATTGAGAGGGCGGCTGCAAGAGAGGGAGGAGGAGAAGAGAGCGGGTTCTGTTGAGGTTTCCGTGACAGCACATTTGGTTCAAAATTTTCAGCAATCTTCCGAACTAAGAACTGCTGAAACAAAAATGGAGGTTCCAAAGGATCAAATCTCCACTCTTCTCGACCTAGGGCTCTACAGTTCAGCTCACATGCTGGGTTGCTTTCTTGTTTCATCGCCTGCTGCTAATGTAGAATCCAGTCCTCACCTCAAGTCTGAGAGCTTGGTGCTTCTTGGGGATGCATTATTTCGAGAAAGGGAGTATCGAAGAGCAATTCATACTTACAAGCAAGCCCTGCAATACTATAAGATTATTCCTAAACAAAATTCAGCTACTATTAGAAGTTCTTTGCAGTCAAACAGGTCCTCTTCTCCAAACTCTTTTAACGTATCAGCCATTAATGAAAATGAGGTGAAGTTTAAAATTGCGTCGTGTTATTGTGCATTAAGTGACAACAGAGCTGCCCTTGTAGAGATGGAGGGAATTCCAAGTAAAGCAAGAAATTTACAAATGAATCTTTTGATGGGAAAGCTTTATAGATTTGCGAGACATAACCGTGCTGCTATTGCATGTTACAAGGAGTGCTTAAGAAATTGCCCTTTTGTGTTTGAAGCTATTATAGCTTTAGCAGAACTTGGCGCTACTGCCAAAGATATCATTTCGTTGTTTCCTCAGGTTGGTTTTCGAATCATGTCGAGTTCTACAGTTAGGTTTCAGAAGCTGCTGACCACTATGCTTATGATAGGTTTTACGAGATGTCAAACCTGGCAGTCCCGTCTTTTGGTTTTGAGTCTCTTATCGTCTTTCTTCTTTTTTAATCCTCTTAGCATGAAGATCATTTGCATCAATGCTGGTTTTGTTTTATCACATCAAACAGAAGTGGCAAAACTCCTTTTGATCACTTTGACTCAAATCGCTGGCTGCCACGCTATGTTGAGGCCCAGTGCTGCATTGCGTCAAATGATTACAAAGGTTGAAGCCATCATGGGAAAAAACGACGAGGCTATCATGAATTTTGAAAAGGCACGATCAATTGATCCATATCTTGTAACATATATGGATGAATATGCAATGCTTCTGAAGATGAAGTCTGATTATTCAATGCTAAACAAGTTAGTCTATGACTTGTTAAATATTGATCCTACAAGACCAGAAGTTTTTGTGGCTTTGTCTGTATTGTGGGAAACAAAAGATGAGAGGGGTGCCTTGTCTTATGCTGAAAAGAGCATCCGAATCGACGAAAGGCATATAACAGGTTTCATCATGAAGGGAAACCTGTTATTAGCATTGAAGCAACCAGAAGCAGCCGTTAGTGCGTTCAGGAATGCGCAAGAGTTGAGACCCGATATTCGTTCATATCAAGGCTTGGTCCATTCTCATCTAGCTCTGTCTAAAATAAAAGAGGCATTATATGCTGCTCGGGAGGCAATGAAAGCGATGCCTCAATCTGCAAAGGCTCTAAAATTAGTTGGGGATGTACATGCTAGTAACTCAGGTGGTAGAGAGAAGGCCAAGAAGTTTTATGAGTCAGCCCTTAGGCTGGAACCTGGTTACCTCGGGTCGGCATTAGCTTTGGCAGAGCTCCATGTAATCGAAGGTCGAAATGGGGATGCTGTATCCTTACTGGAGAGGTACCTTAAGGACTGGGCTGATGATTCTCTTCACGTAAAACTAGCTCAAGTATTTGCAGCCACAAATATGCTGCAAGACGCTTTATCTCACTATCAAGCTGCATTAAGGATGAATCCCCAGAACGAAGCTGCCAAGAAAGGTCTAGAGCGCTTAGAAAAACAAATGAAGGGAGTGGATCCTGATGCACCTGAAGACGACGAAGACAATGAGGTCGATGATGCCGACGGAGACCAAGAAGAAACCGAACTCTTATGA 3408 43.34 MFASSMDTVRDTARNAGTLLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQAIYSLTPGYHQYKFFVDGEWRHDEQQTCISGEYGVVNTVLLATEPSYAAPLANPEMAPGSSMDVDNDAVRRLVRINDGRLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKGIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEELETHTISAWKEGKAYLNGRVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSSAEDGSFPQLLHLSSLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNRRPLAMLRPSASLSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTIHQALQLGQDSFSLYEPRSQRCQMCLRSDSLHKVMDRLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLGQLTPSISHICTLHGEGCWVGQGLILRGRLQEREEEKRAGSVEVSVTAHLVQNFQQSSELRTAETKMEVPKDQISTLLDLGLYSSAHMLGCFLVSSPAANVESSPHLKSESLVLLGDALFREREYRRAIHTYKQALQYYKIIPKQNSATIRSSLQSNRSSSPNSFNVSAINENEVKFKIASCYCALSDNRAALVEMEGIPSKARNLQMNLLMGKLYRFARHNRAAIACYKECLRNCPFVFEAIIALAELGATAKDIISLFPQVGFRIMSSSTVRFQKLLTTMLMIGFTRCQTWQSRLLVLSLLSSFFFFNPLSMKIICINAGFVLSHQTEVAKLLLITLTQIAGCHAMLRPSAALRQMITKVEAIMGKNDEAIMNFEKARSIDPYLVTYMDEYAMLLKMKSDYSMLNKLVYDLLNIDPTRPEVFVALSVLWETKDERGALSYAEKSIRIDERHITGFIMKGNLLLALKQPEAAVSAFRNAQELRPDIRSYQGLVHSHLALSKIKEALYAAREAMKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGSALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQDALSHYQAALRMNPQNEAAKKGLERLEKQMKGVDPDAPEDDEDNEVDDADGDQEETELL 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1808513 1823689 - CmoCh17G003010.1 Cmo17g00301 400684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00301 1135 SMART tpr_5 579 612 IPR019734 GO:0005515
Cmo17g00301 1135 SMART tpr_5 924 957 IPR019734 GO:0005515
Cmo17g00301 1135 SMART tpr_5 823 856 IPR019734 GO:0005515
Cmo17g00301 1135 SMART tpr_5 1059 1092 IPR019734 GO:0005515
Cmo17g00301 1135 SMART tpr_5 676 709 IPR019734 GO:0005515
Cmo17g00301 1135 SMART tpr_5 991 1025 IPR019734 GO:0005515
Cmo17g00301 1135 Pfam Tetratricopeptide repeat 581 606 IPR019734 GO:0005515
Cmo17g00301 1135 ProSiteProfiles CBS domain profile. 335 392 IPR000644 -
Cmo17g00301 1135 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 12 177 - -
Cmo17g00301 1135 Gene3D Immunoglobulins 21 109 IPR013783 -
Cmo17g00301 1135 SUPERFAMILY TPR-like 579 719 IPR011990 GO:0005515
Cmo17g00301 1135 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 178 471 - -
Cmo17g00301 1135 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 178 471 - -
Cmo17g00301 1135 MobiDBLite consensus disorder prediction 1093 1135 - -
Cmo17g00301 1135 ProSiteProfiles TPR repeat profile. 1059 1092 IPR019734 GO:0005515
Cmo17g00301 1135 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Cmo17g00301 1135 Pfam Tetratricopeptide repeat 1030 1092 - -
Cmo17g00301 1135 CDD E_set_AMPKbeta_like_N 22 100 - -
Cmo17g00301 1135 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 12 177 - -
Cmo17g00301 1135 MobiDBLite consensus disorder prediction 1112 1135 - -
Cmo17g00301 1135 Pfam Tetratricopeptide repeat 928 956 IPR019734 GO:0005515
Cmo17g00301 1135 Gene3D - 320 480 IPR046342 -
Cmo17g00301 1135 SUPERFAMILY CBS-domain pair 336 472 IPR046342 -
Cmo17g00301 1135 ProSiteProfiles CBS domain profile. 418 476 IPR000644 -
Cmo17g00301 1135 SUPERFAMILY E set domains 21 102 IPR014756 -
Cmo17g00301 1135 Pfam CBS domain 337 383 IPR000644 -
Cmo17g00301 1135 Pfam CBS domain 424 470 IPR000644 -
Cmo17g00301 1135 SUPERFAMILY CBS-domain pair 157 308 IPR046342 -
Cmo17g00301 1135 Gene3D Tetratricopeptide repeat domain 541 687 IPR011990 GO:0005515
Cmo17g00301 1135 SUPERFAMILY TPR-like 834 1104 IPR011990 GO:0005515
Cmo17g00301 1135 Gene3D - 148 312 IPR046342 -
Cmo17g00301 1135 MobiDBLite consensus disorder prediction 1094 1111 - -
Cmo17g00301 1135 Gene3D Tetratricopeptide repeat domain 811 1108 IPR011990 GO:0005515
Cmo17g00301 1135 SMART cbs_1 339 387 IPR000644 -
Cmo17g00301 1135 SMART cbs_1 421 470 IPR000644 -
Cmo17g00301 1135 ProSiteProfiles TPR repeat profile. 579 612 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00301 - - - csv:101215603 894.804
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01185 Cmo17g00301 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00937 Cmo-Chr13:8215505 Cmo17g00301 Cmo-Chr17:1808513 1.81E-08 dispersed
Cmo17g00301 Cmo-Chr17:1808513 Cmo18g00113 Cmo-Chr18:779149 2.30E-09 dispersed
Cmo08g01189 Cmo-Chr8:7556638 Cmo17g00301 Cmo-Chr17:1808513 0 transposed
Cmo17g00301 Cmo-Chr17:1808513 Cmo08g01185 Cmo-Chr8:7532761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g345 . . . . . . . . Cmo08g01185 Cmo17g00301 . . . . . . . . . . . . . . Cla06g00496 Cam06g0533 Cec06g0533 Cco06g0537 Clacu06g0518 Cmu06g0520 Cre06g1290 . . . Cone4ag0164 . . Chy11g01482 . . Blo07g00184 Bda11g00536 . . Bpe13g00652 . Bma06g01514 Sed04g1816 . . Cma08g01212 Cma17g00313 Car08g01084 Car17g00286 . Cpe17g00008 Bhi12g02089 Tan06g2639 Cmetu11g0405 Lac12g2386 Hepe03g0119 . Lcy13g0194 . . . . . . . Lsi09g01409 . . Cme11g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008189 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00301 Cmo_Chr17 FPKM 1.297167 1.184248 2.705713 2.423535 10.353105 10.267979 9.593016 3.008003 1.86108 2.512608