Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00302 ATGATTATTGGAACTAGGGTTTTGGGTTCACATTTAATGGTGGGCTCTGTGGAGCCGATGATTATTGGGGATTGCATTGACATGGAAGAAGGCGAAGCTTCTTGCTATCACAAGGAAAATGGCGGTGATATTGACCCTGATATTGCTCTCTCTTACATTGATGAGAAGATCGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTCGAAGGTGGAGTTTCAGCCGAAAAGTTAGGTGCAAAGTATGGTGGTTATGGCTCATTTTTGCCTACATACGAACGTGCTCCGTCCATTTTGCCACACAATATAAATCAACAAAGCGACTGCAATGCAGCAGCACCAACTCCAGTTAATGTGCCCTTGGAGAATCCAAAAGCTCCGCCGCCGAAGAGGTCGGAAGCTATTGTCTGCAATGCTATTTCCTCTCACAATAAAGGCACAGCTTCTGGGAGGGTAGATTCATGCTTACCTGCTACTAGAGTTACTAATAGCTACCCCTCGAAAGATGAAGCCACGGGCAGATTAGGCAGTCCAATGAGCAACAGATCGCTTAAATTTCGACTCAAAGTTGGTTCTGACAGCACTGCATTGAAAAATGCAGCAATATACAGTGGCCTTGGACTCGATGACTCTCCATTGTCGTCATCGGAAAACAGCTCCGATGTTAGTGAAGGGATGCTGCCCATTTCTCAAAGTTCACCAGACGAGTCTCCGACTAAGATAATTCAGGCAATGACTTCTTTCCCAGTGCCTCATGGAGCATTGATATCACCTCTTCATGATAGCCTACTCGGGCTGTCGAGAAAGGAAAAACCGTTACGAGAAACCAAACCCGTGCTTTCCCTTGAGGATAAAAAAGATGGTTTGGCCAAGCTTGCCAGTGGGACGATTTTAAAGCAAAATGACAGTACATTGGTTAAGAAGAAGAAAAAGGAGACGGGGCATAAAGAACGGCAGGTCAATCCTAAGAACGAAGTTTATGCTTCTCGTTGTGAGGAGAAGACGACTCTAACTCTCGTAAATGGAAAATCAGAAAATGAGGCTTTTGTAAGCAAGGATTTACTCTCTAATGAGTTGCAATGCAAACCCGGTTCCGAGGTTACTAAGTCCAATGCGTACTTAGACCCACAAAAGAAGAAGCTTTCTCGTAAACCTAAACTACATGAAACGGACAAAGACAAAGCATCGATTAAGAAAGAAAAGCCCGGAATTGTTGGCGAGAAGAATTTGAAAGTTATACAGACTGCTGGTGGGAAAATAGCTGGTTCATTTGAGGAAGGCTTCAAGAATAGAAGTGAAGCATTCAAAGGCAGAAAGGACACTGATTCTGACACTCCAGAATCTGAAAATAGAAAGCACAGGTTAAAACTACACAGCAATGAGAAAGTAGGAACAAACAATGGGGATTCTTTTAACCGCACGGGGTTAGATGAAAACCGTAAAAGTAAGGATGTAATTGAAAGGGCCTCCGGTGACTTACGGAGGCTCGATGGCCTATATGACAGTGGAATCAAATTGTCTAAATCCTTGAAGGTGATCGAACCAGCAGCAGGGGTGGCTCCTGTGGATGAATGGGTGTGCTGTGACATTTGTCAGAAATGGCGCCTTCTACCCTTCGGGACAAAACCCGATCAACTTCCTGATAAATGGTTATGTAGCATGCTCAATTGGCTGCCCGGGATGAACCGGTGTGACATTAGTGAGCAGGAGACGACGGAAAAGCTTTATGCTTTGTACCAGCTACCATTGCCTGAGAGTGGAAATGCTTTGCAGAGCCATGGCAATGGACTAATAGCAGGTGATACTTCAAATGAGGGAAAAAGGAAAGAAATACAAAATCCAGTTAGCAGAAATGGCCCGACTCTTGCAAAGAGTTCTTTGAAAGATCCGCTGCTGGAGTCAAGGAAAAAACGAAGTCTTTATGGCTCAAGTAACGTTCCAAATCAGTTGAAAAATTCAACGGATCGATCTTCTAGTGACCTGCACAACTCGGTAGAGGGAAAGAACCGAGGTAAACTAAAAGAAAAATCGACCGAAAAAGCTAATTGCGACGTATTGAAAAGGAAGAACAAGAGACCGGAAGGCGTGCGCTCTGTCGACAGTCATCAAGACTTCAATATGGAGCTCGGAAAATTGGGTTGTAGCTCGAATTCTGGCTTGACAAATATGGAAGGTGGGGAAGGTATGTTAAAGAAGCACAACAAATCGAACACAGAGAATAAAATGCAAATTTCATTGAAGAAACGTGGAGAAACAGCTGAGATCACAAAGAAAAGGAAAGTGAAGGATTGGCAGGATGATCAAAATTCTCATAACAGTGCACTACTCCATGAACCCGTGCGTTCGAAGGAAGAAAGTTGTGAAAGGTCGAAGAAGAAAAAGAGGTTTGATCGTGTCGAACAAATCAGCCATGATAAGGATAACAAGCCGAAAATGCAAAATAAGAAGAATTTTGCTAAACAAACGTCAGTCGGTAAGGAGTTACTGAAGAGAAATTTAGTTGCTCGACAAGTATCAGCGGCAGGTAACTCTAGCTCTTCAAATGTTTCTCAATCTCATTTAACTAAAGCCAAATTTGGAGTGAAAGTATCTCCTGCTGAATCAGTTTCGTCGTCGCCGATGAGGACATCTGGCCTCGATCAATTTCAAGGAGAAAAAGAGGAGATTACCTCTAATATTCATACTGACTCTCGTAAAGTTACACCGGCGTTTGACGTTGGGGTTAAGGATACTGCTCTCGACACAAACAGCAAGAAAATCAAAGCTTCTTCTGTCGTTCAACGCCATGTCGTTAATGCTGTTAAGGATCCTAGGTTGAGCAAGCCCAGCAACAAGAAACGCAAGAAAGAGAACATACATATTGCTGGTGAAGGACTGGAAGCCCCTCAAAAACAGAAGGGTCACGACGCCGAAGACCAGAGATCGGGTGCTCTACTTCAATCAAATAAAGCAGTTAAACTTCAGACAAAGCTAAGTCGGGATTCCGAAGCGCAAAATAAAGGTGGTCCGAGAACAGTAGAAACAAGGGATGGAAAATCAAAATGCTCCTCTTCTGGAGGTGAATGCAAAGAACCGTCACGTCTTGGTGGTGATCCTTTACGAGTTTCTATTAGAGCAGGCGATTCTCATCAGCTTATTACCGATGCTTCTAAAAGTGGTGACGCAGTCGAGTTGAAGACGATAAAGAATGAACTTAACCACGGATATCAAAAACCTGATCTGCCAGGATCTAGAGATGTTAATGCTTCAAATCTCGACAGAACGAAATTCTCGAATCAGACTGCTTGTAATACATTGAAAGAAGCCAAAAAACTCAGAGACAGTGCAGATCACTTCAAGAGTTCTGGATTCACTTTTGAAAGCAATGAGCTTTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTCTAGAGACACTTAATAATACGAGTGGCAAGCCTGGTGATGTTTCTCCCATGCAGTTCTATGGCATTACAGCTGAATTGTGCGAGATCTGTGCTCTTGAATATGAACGTCGCCAAGAAATGGCTGCAGCTGCTTTGGCTTTTAAATGTATCGAAGTAGCTTATTTGAGGATCGTTTACCATAGACATTCAAGTGTCGATGGAGATCGCCTCGAGATGCACTCGTTGTTCCGTACAATTGTTCAAGGCGAATCTCCGTCTTCTTCTATATCCGATGTCGATAACTTAAGTAATCAAGGAGCTATGGATAAGGCGACTTTTGACAAGGGCAGTTCCCGAGGTGCGGGTAGTCACATCTGGAATGCTGCAAACAGCGCGAGTTTTGCTCGGGTCCTCGACTTTGCGCGGGATATGAATTCAGCTATGGAGGCATCGAGAAAATCTCGAAACGCGTTCGTGGCAGCTACTACTACGAGTTCATGTGGGAGCGAAGGAAAACATGTGGACTATGTTATTGAATCAATTAAAAAGGTGATTGATTTCAGCTTCCAAGAAGTGGAGGAGCTCGTGCAGTTGGTTCGAGTCGCTACACAGATAATAACCCGCTCGGGTTTTCGCAGTGGTAGAGAGTAG 4041 43.68 MIIGTRVLGSHLMVGSVEPMIIGDCIDMEEGEASCYHKENGGDIDPDIALSYIDEKIERFLGHFQKDFEGGVSAEKLGAKYGGYGSFLPTYERAPSILPHNINQQSDCNAAAPTPVNVPLENPKAPPPKRSEAIVCNAISSHNKGTASGRVDSCLPATRVTNSYPSKDEATGRLGSPMSNRSLKFRLKVGSDSTALKNAAIYSGLGLDDSPLSSSENSSDVSEGMLPISQSSPDESPTKIIQAMTSFPVPHGALISPLHDSLLGLSRKEKPLRETKPVLSLEDKKDGLAKLASGTILKQNDSTLVKKKKKETGHKERQVNPKNEVYASRCEEKTTLTLVNGKSENEAFVSKDLLSNELQCKPGSEVTKSNAYLDPQKKKLSRKPKLHETDKDKASIKKEKPGIVGEKNLKVIQTAGGKIAGSFEEGFKNRSEAFKGRKDTDSDTPESENRKHRLKLHSNEKVGTNNGDSFNRTGLDENRKSKDVIERASGDLRRLDGLYDSGIKLSKSLKVIEPAAGVAPVDEWVCCDICQKWRLLPFGTKPDQLPDKWLCSMLNWLPGMNRCDISEQETTEKLYALYQLPLPESGNALQSHGNGLIAGDTSNEGKRKEIQNPVSRNGPTLAKSSLKDPLLESRKKRSLYGSSNVPNQLKNSTDRSSSDLHNSVEGKNRGKLKEKSTEKANCDVLKRKNKRPEGVRSVDSHQDFNMELGKLGCSSNSGLTNMEGGEGMLKKHNKSNTENKMQISLKKRGETAEITKKRKVKDWQDDQNSHNSALLHEPVRSKEESCERSKKKKRFDRVEQISHDKDNKPKMQNKKNFAKQTSVGKELLKRNLVARQVSAAGNSSSSNVSQSHLTKAKFGVKVSPAESVSSSPMRTSGLDQFQGEKEEITSNIHTDSRKVTPAFDVGVKDTALDTNSKKIKASSVVQRHVVNAVKDPRLSKPSNKKRKKENIHIAGEGLEAPQKQKGHDAEDQRSGALLQSNKAVKLQTKLSRDSEAQNKGGPRTVETRDGKSKCSSSGGECKEPSRLGGDPLRVSIRAGDSHQLITDASKSGDAVELKTIKNELNHGYQKPDLPGSRDVNASNLDRTKFSNQTACNTLKEAKKLRDSADHFKSSGFTFESNELYFQSALKYLHGAFLLETLNNTSGKPGDVSPMQFYGITAELCEICALEYERRQEMAAAALAFKCIEVAYLRIVYHRHSSVDGDRLEMHSLFRTIVQGESPSSSISDVDNLSNQGAMDKATFDKGSSRGAGSHIWNAANSASFARVLDFARDMNSAMEASRKSRNAFVAATTTSSCGSEGKHVDYVIESIKKVIDFSFQEVEELVQLVRVATQIITRSGFRSGRE 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1826846 1833294 + CmoCh17G003020.1 Cmo17g00302 400685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 589 700 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 364 401 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 931 1032 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 1002 1016 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 637 659 - -
Cmo17g00302 1346 PANTHER CW-TYPE ZINC FINGER 369 1340 - -
Cmo17g00302 1346 PANTHER CW-TYPE ZINC FINGER 23 366 - -
Cmo17g00302 1346 ProSiteProfiles Zinc finger CW-type profile. 518 571 IPR011124 GO:0008270
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 207 236 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 757 811 - -
Cmo17g00302 1346 Pfam CW-type Zinc Finger 523 569 IPR011124 GO:0008270
Cmo17g00302 1346 Gene3D - 512 573 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 660 700 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 375 401 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 430 455 - -
Cmo17g00302 1346 PANTHER CW-TYPE ZINC-FINGER PROTEIN 369 1340 - -
Cmo17g00302 1346 PANTHER CW-TYPE ZINC-FINGER PROTEIN 23 366 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 776 811 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 974 1001 - -
Cmo17g00302 1346 MobiDBLite consensus disorder prediction 208 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00302 - - - bhj:120067193 1895.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01190 Cmo17g00302 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00397 Cmo-Chr8:2461195 Cmo17g00302 Cmo-Chr17:1826846 5.79E-28 dispersed
Cmo17g00302 Cmo-Chr17:1826846 Cmo17g01090 Cmo-Chr17:8998228 1.94E-25 dispersed
Cmo17g00302 Cmo-Chr17:1826846 Cmo08g01190 Cmo-Chr8:7563782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00302 Cmo_Chr17 FPKM 4.874942 5.478482 6.751645 7.226876 8.050117 7.924098 8.152702 7.70372 6.674526 6.99684