Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00315 ATGGGCGCCCGAACCAACAACCGTAAGCGCGACGACGAGTGCTTGAGCCTTAATCGTTCGTATTCGTCTTTGAAATCACCGGATTTTCACGTCTCCAAGAAACCTAAAGTTTCGGCTTTGTCTTTGGATCGGCCAGTTTCCTCATCGAACTATACGGTGGCTAGGCTTGCCCGGTACCCTGAAGAAACTCCGCAATTGCGCCGAGAAGTACACGGCCCTTGCAGAATTCGCAAATTCGGGCTTTCGAAGAGCTTCTCTAGGCATTGGGAGTCAAAAAATAATTGCGAGTCGTCGGAACAGTACGCGGCGGGAAATATGTTGTCGTACAACTACCAGATTGCGAAGAATCGTGCAATTGGTGCATTGCGGTCATTCCCGAAGGATTTCATTGACTTGGATTCAGACTCTGAAACCGAAAGAGGCGCTTCTGGAGATTCGAAGAACGAAGACGGCGTCGAGGCAATTGAAGATGATAAACCGGACCAGAGGCCACGTGAGGTTAATACAGTGCAGGAATTGGATGCGAAGATGAAGAATGTTCATCAGCCGTCGACGTCGGTAGTTGTAGATTTGACAAATGCTGATTCTAAGGTCGAAAACGCTGAGGCGATGCTTGGTGCTTTGTCACTGGATCGAGACTTGTCCAGTGTTTCTGCTTACAAGAAGTTGCTTCAGACTGTGGAAAGGCGGACATCGAGATTGAAAAGCTTGGATTTCGAAATCGAGTTGAACGAGAAGCGCCGATCGATTCTTCAATCCCGAACTCCAAAGAAGAAGCCTCTTGATGAGATTCCACAGGAACTTTTTACTCCTCTTACAAAGGAAGAGGAGGCGCAGGTTGAACGTGCGCTCTCTACGAACCGGAGGAGAGTTTTGGTTACTCATGAGAATTCGAATATTGAGATTACTGGGGAAACTTTGCAGTGTCTGAGACCAGCTGCCTGGTTAAACGACGAGGTGATTAATTTGTATCTTGAGTTGCTGAAAGAAAGGGAAAGAAGGGAGCCAGAGAAGTATTTGAAATGCCATTTCTTTAGTACCTTCTTCTATAAAAAGTTAAATGGAAGGAATGGCTACGATTACGGATCGGTTAGGAAATGGACCAACCCAAAGAAGTTGAAGTATGAACTCATTGATTGTGATAAAATATTTGTCCCTATCCATAGAGAAATACACTGGTGCCTAGCAGTAATCAACAAGAAAGAGAAGAAATTTCAGTATCTCGATTCTCTGAAGGGAATGGATTCTCGTGTTTTAAAGACATTGGCGAGATATTTTGTAGACGAGGTGAAGAACAAGAGTGGAAAAGATATTGATGTAAGTTCTTGGGCACAAGAATTTGTCGAAGACCTTCCCGAGCAAGAAAATGGGTTTGATTGTGGCATGTTTATGATCAAGTATGCTGATTTTTATAGCAGAGGCTTGAATCTCTGTTTCAAGCAGGAACACATGCCTTATTTCCGACGTAGAACAGCCAAGGAAATTTTGAAATTGAGAGCTAACTGA 1506 44.36 MGARTNNRKRDDECLSLNRSYSSLKSPDFHVSKKPKVSALSLDRPVSSSNYTVARLARYPEETPQLRREVHGPCRIRKFGLSKSFSRHWESKNNCESSEQYAAGNMLSYNYQIAKNRAIGALRSFPKDFIDLDSDSETERGASGDSKNEDGVEAIEDDKPDQRPREVNTVQELDAKMKNVHQPSTSVVVDLTNADSKVENAEAMLGALSLDRDLSSVSAYKKLLQTVERRTSRLKSLDFEIELNEKRRSILQSRTPKKKPLDEIPQELFTPLTKEEEAQVERALSTNRRRVLVTHENSNIEITGETLQCLRPAAWLNDEVINLYLELLKERERREPEKYLKCHFFSTFFYKKLNGRNGYDYGSVRKWTNPKKLKYELIDCDKIFVPIHREIHWCLAVINKKEKKFQYLDSLKGMDSRVLKTLARYFVDEVKNKSGKDIDVSSWAQEFVEDLPEQENGFDCGMFMIKYADFYSRGLNLCFKQEHMPYFRRRTAKEILKLRAN 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1903800 1908270 + CmoCh17G003150.1 Cmo17g00315 400698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00315 501 ProSiteProfiles Ubiquitin-like protease family profile. 300 471 IPR003653 GO:0006508|GO:0008234
Cmo17g00315 501 Pfam Ulp1 protease family, C-terminal catalytic domain 315 495 IPR003653 GO:0006508|GO:0008234
Cmo17g00315 501 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 500 - -
Cmo17g00315 501 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 500 - -
Cmo17g00315 501 Gene3D Adenoviral Proteinase; Chain A 269 499 - -
Cmo17g00315 501 SUPERFAMILY Cysteine proteinases 269 500 IPR038765 -
Cmo17g00315 501 MobiDBLite consensus disorder prediction 133 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00315 K08592 SENP1; sentrin-specific protease 1 [EC:3.4.22.68] - csv:101210787 838.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01202 Cmo17g00315 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00315 Cmo-Chr17:1903800 Cmo18g00806 Cmo-Chr18:9501803 2.31E-13 dispersed
Cmo17g00315 Cmo-Chr17:1903800 Cmo08g01202 Cmo-Chr8:7630633 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006082 1 3 1 1 1 1 3 1 1 1 0 1 1 1 1 2 1 2 2 1 1 2 1 1 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00315 Cmo_Chr17 FPKM 66.63427 70.342232 56.999596 61.2444 48.054157 47.277035 45.963062 36.553295 34.488243 34.099586