Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00320 ATGGAGGAAGCCGTTTCTCGAATCCTCACAGAGCTCGAAGAAGCTCGCTGTTTCGACGGCTCTACAAATCTCCATTCTCAGCCTCCGCCGCCGCTCTCCGAGTCCGCTCTCTTCAACCTTCAAAGCTTGTTGGACAACTCAATCGGTACCGATGAACAACAACCAGTCGATCGCCTCTACGAAGACCTCTCTGCCAAATCCCTGTCTCCGTCCTCCCTCATCCGCGCCATCGCCTCCGCCATGGATGAGCCTTCCCCTCGCGTTTCGATCTTAGCCTCTAAAGTCTATTTGTCCCTTCTTCTGGCCCCAAATGCACCAGTTTTCACGCTGTTCAATCCGATGGATTTTCTTTCGTTTCTCAGGTCTATGAGACGATTCTTGAAGCAGCGACCACGGACTACGCCGAATCAGGAGTCCATTGCTCCCAAACGGAAGAGGAAAGGCGGTGTTAAGGGTAAGGGTTTGAGGAATTGTGCGCAGAGGCAGAGTTTTAATGGCGGACATCATGATGGTGAATTCGATGCAAGAGTCTTGTATCCTGTGCTTGAGAGGTTAGGGATATTAATGAGTTTGATTCATTTGGATCGATTCCCTGATAGTTTGAAATCTTTGGTTGAAACTGTAATTGATATTCCGGTTTTGGCACTAGAAGTATGCAGTAATTTAAGTATCTATAGTAAGTTAACCAATTTATGTTCGCGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTGGTGAGTATTGCCGCTGAGGTGATTAAATCTCTATCACCATTGATTCTTCATCATAAAGATCAGGCGCGAGCGTTTGCGCTGGAGTTTGTCACTATTCAAATAGCGAATGCAGCAAAGGAATCAGATGGTGTTAAAAGCGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCACCTGAGAAATCCGAGCCTCGTGCTTTAGCTGTTGATTCAATAATGGAGGTTGTTAAAGTGATGGAATTCAAGGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCCGAGGAAAGTCTAATCTTAGGCTGTTAGCTAGTGATCTTATCTCAACGCTGATAATGTCCTTGAGTGATCCAGTGGCCGTTGATTCCGAAAGTGAACTGAAGGATTCGTGGAGATTTGGGTGCTTGGTGGCATTGGTCCAACGATGTTCAGATGCTGGTGCTACAATTCGTGCCCGGGCACTATCCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGACAATGACAAGAATAAGGCCTTACTGAAGGAAGTGTTGGGGTCTGGTGACAGACATTGCAAAAAGAATGGAAGTGAAATTCATGCTCGTTTGCGAAAAAGGTGTGTGGATGAGAAGGCGGCAGTTAGGAAGGCTGCGTTATTTCTGGTTACCAAGTGTACAGCCCTCCTTGGTGGATCAATGGATGGAGATATGCTGAAGACCGTTGGAATTGCTTGTTCCGACCCACTTGTTAGCATACGGAAAGCTGCAATGTTGGCTCTTTCTGAGGCCTTCCGAAGATTCCCAGATGAAAGTGTCACTGTCGAGTGGCTACATTCTATTCCACGTTTGATTGCTGATAATGAATCTAGCATTCAAGAAGAGTGTGAAAACTTGTTTCAAGAACTAGTACTTGACCGGCTGTCTAGAGTTGGATCTTCAAGTTTACCCCGTGATGGATCAAGAACACTTGATTTAAAGAGGCAATTTGAGTTGTTAATTCCTGGAGTATTGGATCTTCTTAAAGAGATAAGTCATGCAGAGGTAATGCCGTGGGTGAAGAAAGTTTGTGCTAACTTGGGAAAAAAGAAACGATTAAAACCCTCAATTGCCGTTTCACTTCAGAAGATTATAGGGACATCTGAATCCCTATGGCTAAGGCAATCCTTACCACCGGAGAAGTGGACAGCTCCCCCGGGTGCCTGGTTCCTGCTGTCGGAAGTGTCAGCTTATCTTGTGAAAGAAGTGGACTGGGAGTTTCTTCATCATCACTGGAAAATCCTGGATGATCATGGTAGGACTGAGTTTGGGAGTCCAGTGGCTCAAGTAGGTTTATTCGGAGATGAAAACAACCCAGAGTCAAATTCCATCGCTTGGGCTCAAGATCGAGTTTTTCTCTTGCAAACCATCTCTAATGTTTCTCTTGAGCTGCCTCCAGAACCTGCAGAAAAGTTGGCTCACGAATTGATTAAAAAGGTTGAAGAATTCAGCATGCATTCTACCGAGGTGAATGCGCATGTAAAAACACTTAAAACATTGTGCAAACGGCAGGCTATGCAATCTGCTGAAGCCGATACGCTGATCCTAACATGGGTAAACCAGCTGCTCTCCAAAGCCTCTCAAATATTGGAGAAGTATATATCCAAGCATAGAAAAGCAAAAAAAGATGTGAACTTCATAACACCACCTCCTAAAAGTGGTAGTAGATTGGGAAAGCGTGCAACTGCCCCGAGCAAGTCCCTGTCACGAGCAATCACTGCCGCTTACACCATTGGCTCTTTGATTATCATCTGTCCATCTGCTGACATAACTACCATCATACCACTTCTCCACACCATTATCACTTCTGGAAACCGTGATCCCAAATCGAATAAACTACCTATTCAAACGGTATCTATAAAGGAAACTGCGCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGTGTGCAAAGAGCTACATTCCTCTATTTTTACAGGAGCTTGAAAATAGTGACTGTGCAGCTCTCCGCAACAACCTTGTTATCACGATGGCAGATTTTTGTGTACGCTATACTGCTCTAGTTGATTGCTACCTTACGAAGATCACGAAATGCCTTCGCGACCCTTGTGAACTTGTCAGAAGACACACATTCATACTTCTATCGAGATTACTACAGAGAGACTACGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTCTCACTTGTCGACGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTCGGGAACATTTTAAAAGTAAAGGCGCCACTTTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTCTGAATGACTGTCGTGCCCATTCTGGACATAACGATTCGAAGGCTTCGAGAGCTGAAAGCCGATTATTCTCCATTCGAGGTAATGATGAAAGTTCGAGGCGCAAGAGAATGCACATTTATGTTTCTTTGTTAAAACAAATGTCTCCCGAACATCTCCTGGCCACCTTTGCAAAGCTATGTTCAGAGATTCTTGGTGAAGCTTCAGATGGTAAACTCAGTATGGATGATACCACTGCACGGTCTGTTTTACAGGACACCTTTGATATTCTTGCTTGTAAGGAGATTCGATTATCAATAAATCGAGGGTCGTCGTCGGAATCTGGTGATGTAGATGAGGAAGGAGGCGAGAGCGGAGGGGCGTCTGCTGCTAGAGGAAAGGTTATCACTCATGTTGTGAGAAAAAGTCTCATTCAAAACTCCCTTCCCATCTTCACTGAGCTAAAAAGGCTAATGGAAAGCAAGAATAGCCCTCTTATAGGTTCTCTTATGGAATGTCTTCTAGTTCTTCTCAAAGACTACAAGAACGACATCGATGACATGTTGGTAGCTGATAAGCAACTTCAGAAAGAGCTTGTCTATGACATTCAAAAGTACGAAGCTACCAAAGCTAAGTCGGCCGCGGCCGCAGCGGTCAACGAGATGCAAAAGTCAACTAATTATATTTCTCCTGAGGCTCCTCCTCATGTTAGAAACTCCATTAGCAAGCTAACCTCCAAACTCCAAAAGGACTCAAGAGTTGCTTCAGCCATTGCTGATGTAGCCGCTGCAGCCACTGCTAAGTCTGTGCTTAGGGAAGTGAATAGAGGGACTTCGACGCCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGGCGCAAATACCTCACGCTTGAATGTGATTGAATCTGTGAGGAAACGGCAGTCTTTTGATTCTGATGAAGAAAACTAA 4026 44.61 MEEAVSRILTELEEARCFDGSTNLHSQPPPPLSESALFNLQSLLDNSIGTDEQQPVDRLYEDLSAKSLSPSSLIRAIASAMDEPSPRVSILASKVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRFLKQRPRTTPNQESIAPKRKRKGGVKGKGLRNCAQRQSFNGGHHDGEFDARVLYPVLERLGILMSLIHLDRFPDSLKSLVETVIDIPVLALEVCSNLSIYSKLTNLCSRILSATLRPEHGDLVSIAAEVIKSLSPLILHHKDQARAFALEFVTIQIANAAKESDGVKSALVNLPRYLVQKAPEKSEPRALAVDSIMEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLASDLISTLIMSLSDPVAVDSESELKDSWRFGCLVALVQRCSDAGATIRARALSNLAHLVVFLSDNDKNKALLKEVLGSGDRHCKKNGSEIHARLRKRCVDEKAAVRKAALFLVTKCTALLGGSMDGDMLKTVGIACSDPLVSIRKAAMLALSEAFRRFPDESVTVEWLHSIPRLIADNESSIQEECENLFQELVLDRLSRVGSSSLPRDGSRTLDLKRQFELLIPGVLDLLKEISHAEVMPWVKKVCANLGKKKRLKPSIAVSLQKIIGTSESLWLRQSLPPEKWTAPPGAWFLLSEVSAYLVKEVDWEFLHHHWKILDDHGRTEFGSPVAQVGLFGDENNPESNSIAWAQDRVFLLQTISNVSLELPPEPAEKLAHELIKKVEEFSMHSTEVNAHVKTLKTLCKRQAMQSAEADTLILTWVNQLLSKASQILEKYISKHRKAKKDVNFITPPPKSGSRLGKRATAPSKSLSRAITAAYTIGSLIIICPSADITTIIPLLHTIITSGNRDPKSNKLPIQTVSIKETAPSLYVQAWLTMGKICLADEKCAKSYIPLFLQELENSDCAALRNNLVITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLFSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHNDSKASRAESRLFSIRGNDESSRRKRMHIYVSLLKQMSPEHLLATFAKLCSEILGEASDGKLSMDDTTARSVLQDTFDILACKEIRLSINRGSSSESGDVDEEGGESGGASAARGKVITHVVRKSLIQNSLPIFTELKRLMESKNSPLIGSLMECLLVLLKDYKNDIDDMLVADKQLQKELVYDIQKYEATKAKSAAAAAVNEMQKSTNYISPEAPPHVRNSISKLTSKLQKDSRVASAIADVAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGANTSRLNVIESVRKRQSFDSDEEN 1341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1926965 1934216 - CmoCh17G003200.1 Cmo17g00320 400703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00320 1341 Coils Coil 1195 1215 - -
Cmo17g00320 1341 MobiDBLite consensus disorder prediction 1290 1341 - -
Cmo17g00320 1341 MobiDBLite consensus disorder prediction 129 153 - -
Cmo17g00320 1341 PANTHER CONDENSIN 3 1328 IPR026971 GO:0007076
Cmo17g00320 1341 MobiDBLite consensus disorder prediction 1290 1328 - -
Cmo17g00320 1341 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 3 1328 - -
Cmo17g00320 1341 MobiDBLite consensus disorder prediction 1126 1146 - -
Cmo17g00320 1341 Pfam non-SMC mitotic condensation complex subunit 1 920 1097 IPR032682 -
Cmo17g00320 1341 SUPERFAMILY ARM repeat 336 1200 IPR016024 -
Cmo17g00320 1341 Gene3D - 384 551 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00320 K11491 NCAPD3; condensin-2 complex subunit D3 - csv:116405799 1858.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00523 Cmo-Chr14:2641521 Cmo17g00320 Cmo-Chr17:1926965 2.01E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00320 Cmo_Chr17 FPKM 97.92115 108.972939 0.0 0.0 0.32334 1.381435 0.156376 0.127972 0.0 0.0