Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00321 ATGAATTCTGAGTTGTTTCGAAGAAATCAATCGAATCCGACGCTACAAACTAAAAATTCCGTGATTGGTCCACCGAGGACTCCGGCAGGTTGTTCAAGCAAATTCAGGAGTCCGATCCGTTACATGCTTCGGGAGCAGCGTCTTCTATTCGTTTTCATTGGCATTGCGATTGCAACTCTGTTGTTTAACGTTGTCCGTTTGACTTTTCCGTTGGAGCTTCGTGATGATCAACGGTATCGAGCGGAGTTGAATCCTTTCGTTCGATTGGATTCGTCGATCCCGATGCGGAGAGTTCTGTACGAAACTCGCCGTGAAGGATCGCTAGGGCGGGTGAATATGGCGGGTAAAGTCCCGCCGGGATTGAAGAAGAGGAACCTGAGGATCGTAGTTACTGGCGGCGCTGGATTCGTTGGAAGCCATCTCGTGGACCGTCTGATGGAGAGGGGCGATAACGTGATTGTCGTTGATAATTTCTTCACCGGCCGGAAGGATAATCTGGTTCATCATTTCGGAAACCCGAGATTCGAACTGATCCGACACGACGTTGTCGAGCCGATTCTATTGGAAGTTGATCAGATCTTCCATTTAGCTTGCCCTGCTTCTCCTGTTCATTACAAATTCAATCCTGTCAAGACAATCAAGACCAATGTCGTCGGCACATTGAACATGCTAGGGCTTGCGAAGAGAGTTGGCGCTCGCTTTTTGCTGACCAGCACCAGCGAAGTCTACGGCGATCCGCTCCAACACCCGCAGGCTGAAACCTACTGGGGCAACGTCAACCCCATCGGTGTTCGGAGCTGCTACGATGAAGGAAAACGCACGGCGGAGACTCTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTCCGGATTGCTCGGATATTCAACACTTATGGACCACGGATGTGCATCGATGACGGACGAGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTTTATGGAGATGGCAAGCAGACCCGAAGCTTTCAATACGTTTCTGATCTGGTGGAGGGTTTAATGAAACTCATGGAAGGTGAGCACGTGGGCCCTTTCAATCTAGGCAACCCCGGCGAATTTACTATGCTTGAACTTGCTCAGGTAGTGCAAGAGACAATAGATCCAAATGCAAGGATAGAGTTCAGGCCGAACACCGAAGACGACCCACACAAGAGGAAGCCCGACATTTCCAAAGCTAAGGAGCTTCTTGGTTGGGAGCCCTCTGTGTCCCTTCGTAAGGGCCTTCCCCTTATGGTTTCCGACTTCCGTCAGCGCATCTTCGGCGACCTCAAAGACGACGCCTCCTCCTCCTCCTCCGCCGCCGCCGCCACCCTCTCCACCCTCTCCACCACCTCCTCCGTCTAG 1383 51.48 MNSELFRRNQSNPTLQTKNSVIGPPRTPAGCSSKFRSPIRYMLREQRLLFVFIGIAIATLLFNVVRLTFPLELRDDQRYRAELNPFVRLDSSIPMRRVLYETRREGSLGRVNMAGKVPPGLKKRNLRIVVTGGAGFVGSHLVDRLMERGDNVIVVDNFFTGRKDNLVHHFGNPRFELIRHDVVEPILLEVDQIFHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDISKAKELLGWEPSVSLRKGLPLMVSDFRQRIFGDLKDDASSSSSAAAATLSTLSTTSSV 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1935823 1940118 - CmoCh17G003210.1 Cmo17g00321 400704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00321 460 Gene3D - 249 433 - -
Cmo17g00321 460 Gene3D - 122 248 - -
Cmo17g00321 460 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 433 IPR036291 -
Cmo17g00321 460 MobiDBLite consensus disorder prediction 437 460 - -
Cmo17g00321 460 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 1 446 - -
Cmo17g00321 460 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 446 IPR044516 GO:0042732|GO:0048040|GO:0070403
Cmo17g00321 460 CDD UGD_SDR_e 127 429 - -
Cmo17g00321 460 MobiDBLite consensus disorder prediction 1 23 - -
Cmo17g00321 460 Pfam GDP-mannose 4,6 dehydratase 130 422 IPR016040 -
Cmo17g00321 460 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00321 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - csv:101222435 793.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00800 Cmo-Chr4:4006559 Cmo17g00321 Cmo-Chr17:1935823 5.43E-13 dispersed
Cmo04g02754 Cmo-Chr4:19931681 Cmo17g00321 Cmo-Chr17:1935823 9.35E-175 dispersed
Cmo05g01221 Cmo-Chr5:9551728 Cmo17g00321 Cmo-Chr17:1935823 1.27E-29 dispersed
Cmo12g01139 Cmo-Chr12:10363926 Cmo17g00321 Cmo-Chr17:1935823 3.00E-31 dispersed
Cmo15g00416 Cmo-Chr15:1880596 Cmo17g00321 Cmo-Chr17:1935823 1.91E-173 dispersed
Cmo16g00667 Cmo-Chr16:3317657 Cmo17g00321 Cmo-Chr17:1935823 3.43E-14 dispersed
Cmo01g00321 Cmo-Chr1:1529049 Cmo17g00321 Cmo-Chr17:1935823 0 wgd
Cmo14g00930 Cmo-Chr14:4933640 Cmo17g00321 Cmo-Chr17:1935823 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00321 Cmo_Chr17 FPKM 25.583334 29.265409 8.008551 5.2291 0.0 0.0 0.0 0.0 0.0 0.0