Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00328 ATGTCCAACGGATTTGATGCCGAAAGCGACAAAAAGAAGAAGAAAATCGCCGTCATTAGCGTTTCTTCTTTAATCCTCGTCGCTATGGTGGTTGCCGTCACCGTCGGCGTCAACAACGCTCCTCAAGAGGATCTCGACGACGGCGGTGGAGGCGGAGGCGGCGACGCTCATGATCACGGTGACGACGCCGAGAAGATTTCGTCATCAACTAAAGCAATCAAAACCATTTGTCAACCAACGGATTACAAAGAAACTTGCGAAGAGAGTTTAATGGTGGAAGCCGGCAACACAACCGACCCGAAAGAGCTTGTCAAAGCCGGGTTCAAAATCGCCGTGGAAAAACTTAACGCGGCGATTAGAAATTCCACTACGCTTCAAGAATTAGCTCAAGACCCAAGAGCCAACCAAGCTCTTCAAAATTGCCGCGAGTTATTGGAATACGCCATCGACGATCTCCACGATTCTTACCATCGAATCGGCACCTTCCACGTGTCGAAATTTGAGGAGTTTGTTAACGATTTAAAGATTTGGCTTAGTGCAGCTCTCACTTATGAACAAACTTGTCTTGACGGATTTGAAAACACTACCGGCGATTCCGGAGAGAGAATGAAAGAATTTTTGAAGTCCGCTCAAGAAATGACCACTAACGGCCTTGGTATTGTCAGTGAATTGTCCAAAATTTTGGGTACACTTGACGCGCCGGCAGCGACTGGGCGGCGACTTTTGGACACTGACATTCCCTTGTGGGTTAGCGACGGAAAGCGGCGGCTAATGCAAGTGGGGACGGGGGCGATTAAGCCCGACCTGGTGGTGGCTCAAGATGGGAGCGGAAAGTACAAGACAATAAATGAAGCTTTGGTTCATGTCCCGATGAAGAGTAATAAAACGTTTGTGATTTATGTCAAAGCCGGGATTTATAAGGAAATTGTTGTTATTCCTAAGCATATGACTCATTTGACCATGTATGGCGACGGACCGACCAAATCTGTCGTTACCGGTAATTTAAATTTTGTCGATGGCATTCAAACTTTCAAGACAGCTACATTCGCTGCTATTGGAGCTAATTTCTTCGTTCGAGACATGGGGTTCGTGAACACTGCTGGACCGACAAAGCACCAAGCTGTAGCCCTACGTGTCCAATCGGATCGAGCCATCATTTACAATTGTCAAATAGATGGGTACCAAGACACTCTCTACGCCCATGCTAACCGTCAGTTCTATCGAGACTGCATAATCAGTGGCACCATTGATTTCGTGTTTGGCAACTCTGCAGCTATCTTCCAAAACTGCAAGCTAGTGGTTCGTAAGCCATTGGATAATCAACAATGCATTGTCACAGCTCATGGGCGGCTCAATCGTCGTGAACCGACGGCATTGATCTTCCAAGGCTGCCACTTCATGGGTGACCCGTCTTACTTGCCGTTCAAGAAAGTGAACAAGGCGTATTTGGGGCGGCCATGGAAGCAATATTCACGAACCATTATAATGGGGTCTCAAATCGACGACTTGATCCAGCCGGAAGGATGGTTGCCGTGGATGGGCGATTTTGCACTCAATACGTTGTTCTACGCCGAGGTACAGAACAGAGGGCCAGGGGCTGATCAGAGCCATAGAGTAAAGTGGCGAGGAATTAGACATATTACGCCGCAGCACGCCGCAGCTTACACTGCCAGACGATTTATTGACGGCGATGCTTGGATTCCAGTCAGAGGGGTCCCCTACTCTTCTGGAATGATGTAA 1740 48.05 MSNGFDAESDKKKKKIAVISVSSLILVAMVVAVTVGVNNAPQEDLDDGGGGGGGDAHDHGDDAEKISSSTKAIKTICQPTDYKETCEESLMVEAGNTTDPKELVKAGFKIAVEKLNAAIRNSTTLQELAQDPRANQALQNCRELLEYAIDDLHDSYHRIGTFHVSKFEEFVNDLKIWLSAALTYEQTCLDGFENTTGDSGERMKEFLKSAQEMTTNGLGIVSELSKILGTLDAPAATGRRLLDTDIPLWVSDGKRRLMQVGTGAIKPDLVVAQDGSGKYKTINEALVHVPMKSNKTFVIYVKAGIYKEIVVIPKHMTHLTMYGDGPTKSVVTGNLNFVDGIQTFKTATFAAIGANFFVRDMGFVNTAGPTKHQAVALRVQSDRAIIYNCQIDGYQDTLYAHANRQFYRDCIISGTIDFVFGNSAAIFQNCKLVVRKPLDNQQCIVTAHGRLNRREPTALIFQGCHFMGDPSYLPFKKVNKAYLGRPWKQYSRTIIMGSQIDDLIQPEGWLPWMGDFALNTLFYAEVQNRGPGADQSHRVKWRGIRHITPQHAAAYTARRFIDGDAWIPVRGVPYSSGMM 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1985349 1987158 - CmoCh17G003280.1 Cmo17g00328 400711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00328 579 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Cmo17g00328 579 MobiDBLite consensus disorder prediction 50 67 - -
Cmo17g00328 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 225 IPR035513 -
Cmo17g00328 579 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Cmo17g00328 579 SMART PMEI_2 68 220 IPR006501 GO:0004857
Cmo17g00328 579 PANTHER PECTINESTERASE 16 578 - -
Cmo17g00328 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 69 223 IPR006501 GO:0004857
Cmo17g00328 579 Pfam Pectinesterase 268 564 IPR000070 GO:0030599|GO:0042545
Cmo17g00328 579 CDD PMEI-like_3 75 226 - -
Cmo17g00328 579 Pfam Plant invertase/pectin methylesterase inhibitor 72 219 IPR006501 GO:0004857
Cmo17g00328 579 Gene3D - 262 578 IPR012334 -
Cmo17g00328 579 MobiDBLite consensus disorder prediction 41 67 - -
Cmo17g00328 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 226 IPR035513 -
Cmo17g00328 579 PANTHER PECTINESTERASE 16 578 - -
Cmo17g00328 579 SUPERFAMILY Pectin lyase-like 264 577 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01648 Cmo17g00328 CCT
Cmo06g01513 Cmo17g00328 CCT
Cmo08g01213 Cmo17g00328 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00010 Cmo-Chr6:86808 Cmo17g00328 Cmo-Chr17:1985349 3.49E-161 dispersed
Cmo11g01246 Cmo-Chr11:7830333 Cmo17g00328 Cmo-Chr17:1985349 0 dispersed
Cmo15g00892 Cmo-Chr15:4506057 Cmo17g00328 Cmo-Chr17:1985349 2.08E-162 dispersed
Cmo17g00328 Cmo-Chr17:1985349 Cmo06g01513 Cmo-Chr6:10795720 0 dispersed
Cmo10g01213 Cmo-Chr10:11879386 Cmo17g00328 Cmo-Chr17:1985349 8.70E-59 transposed
Cmo14g01648 Cmo-Chr14:13035160 Cmo17g00328 Cmo-Chr17:1985349 0 wgd
Cmo17g00328 Cmo-Chr17:1985349 Cmo06g01534 Cmo-Chr6:10858549 0 wgd
Cmo17g00328 Cmo-Chr17:1985349 Cmo08g01213 Cmo-Chr8:7701057 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00328 K01051 - csv:101221958 922.154