Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00333 ATGGCGGACTGGCGGACGGAGTCACTCCACGACACTGGTAATGATCCGCCGTCCCAATCTCGTGGGCCGCTCTGGGCCTTCAAGAACAAATTTCGATCTCTCGATTCCTCTGTTTCTGTTTTCCGTGGATTAAGAGTGTTCAATCGTGGCTGTGTTCGATCAAACGAAGCTGCTGTAGCGTTGGACAGATTAGGAATGGGATCGGAGCAGTTGGTGGATGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTACGGCTTCGATGTCGTCGTTCTTCTCGTTTCATCACGACGCTCCTGAGCCGACTAGGATTTTCGATGAGTTGCCGAATGCCACAATCATTTCCGTTTCTCGCCCTGATGCCGGCGATATTAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTCAAATGGCGCATGTTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTTGCATTAAAGAAACGGGCGTTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATCGGAGATCACACAGCAGTGCCCCAAGATGAGGATGGACCGGATGACGAGGCTGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCTGCCCTGCCTATCATTCATCCTGCCTTAGGGAGGCAGCAGTCTATGTCTGATAGGGCTAAGAATGCAATGCAAGGGTATTTGAATCACTTTTTGAGTAACATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTGTCATTTTCACCAGAATATGGCCCAAAGTTGAAGGAGGATTATGTCATGGTGAAGCATCTACCTAAAATTGCAAAGGAAGATGACGCTAGGAAATGTTGTCTATGCCTACGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGATTCTTGGCCTTGTTGGGAGATCCATTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCTGATGCCAATGGAGACGGACGAGTATCTTTGGCTAAGGAAATTAAGGAGCGAAATCCGTTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATAAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAACGATGCTGGACTGAGGCCTCCTGAGGGATGGTGTCATCCTCATCGTTTCGGTTCTTATGCACCACCAAGGGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATCGATGGCCTAGCAGCGTTTGAAGCTATTTCCGTTTCCATTGAACGGGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATTTGCGGCGTCCTTTTGTTTCAAATGCTTCGTCTAGGCTCGATGATTTACTTGAAGCGAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAACTTCTCGGCATCCATGAGAATGTGAGAGTATTACGTTACCCTGACCACTTCTCTAGTGGCGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTACGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCGATATGGCCTGGGAAGGACTATTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAGGAAATATCCCCGGATGCCATGGCATGATGTCCACTGTGCACTTTGGGGGCCACCATGTCGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAACGAGCAGGCAATTCCGTTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAATTCAGGATTCATTTTCTCGAGGATCATCTTTCCAGGATATTCCATTGCTTTTGCCTCAAGAGGCGGATGGACCCGATGCTGAAAATGAAGGTCCAAAATTAAACGGACTGGTGCCCGTTGGCAGTCCCCTTGATCAGCCAAGTAAGATCAGCAGCAGTCTTCCTTTCTCTTTCAGGAAGATCAAAGTTGAACCCATAGGATCAGATATGCCTCTGAAAGGCTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTCGTCTGGAGATGGGAAAACACATCATCATGTCAAAAGCTCGGAGTTTGAGTGGTGGGAAAAACAAGATAGGGAACATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCATGCGCTTCATGTCGTTGCCAGGTCATAAGAAGTGTCAGTCAGTGGTCTGCTGGGACAAGCCGAACTGAAGACAGCATTCACATTGCATATTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTATATTGAGAATCAGTTTTTTATATCAGGCCTCGCAGGAGATGAATCAATACGGAACCGTGTGTTAGAAGCACTCTACCGTCGGATAATGAGAGCCCACCGTGAAAAGAAGACGTTTCGGGTTATTGTTGTCATACCACTCTTACCTGGATTTCAGGGAGGTCTGGATGACAGCGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGCCGAGGACCAAATTCCATGATGCATAATCTTTATGATCTTCTTGGCTCAAAAGTACAGGAGTATATATCATTTTATGGCCTCAGATCTTATGGTAAACTCTTTGATGGTGGTCCTGTAGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATCGATGATTGTATCGCTTTGATTGGATCGGCTAATATCAACGACAGGAGTTTACTCGGTTCTAGGGATTCTGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGAACAACCATGGAAAGCAGGAAAGTTTTGCTGGAGTCTCCGCCTTTCTCTTTGGTCTGAACATCTTGGTCTTCGTCCTGGACAGATCGATCAAATAGTTGATCCAGTTGCTGATTCAACTTACAAGGATACTTGGATGGCAACTGCTAAGACAAACACAGCAATATACCAAGACGTTTTTTCTTGCCTACCGAGTGACCTCATAAACTCCAGAGCTGGATTGAGACAGAGCGTGGCGATGTGGAAGGAGAAACTCGGGCACACAACAATAGACTTAGGGATTGCACCAGAGAAGCTCGAGGTTTACAAGAATGGAGAAATTGAAAAGATTGATCCAATGGAGAGATTAAGTTCAGTGAAAGGGCATCTTGTTTCCTTCCCATTGGAGTTCCTGAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTACTATGCATCTCAAAAATCTGCGCTCGCCGGGAAGTTTCCGATTCCGGCCGGAGACGATTACTTTCACGAGGTTGTTTCAGACTTCAGCTATATAACTTGCCGTATACTTGAACGATTCCGGTGGCACTTCGGATTTGGTCGGGTTTGA 3660 44.34 MADWRTESLHDTGNDPPSQSRGPLWAFKNKFRSLDSSVSVFRGLRVFNRGCVRSNEAAVALDRLGMGSEQLVDGGGPRYVQMQSEPPTASMSSFFSFHHDAPEPTRIFDELPNATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDHTAVPQDEDGPDDEADPLHHDESSKNRDVPSSAALPIIHPALGRQQSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIAKEDDARKCCLCLRFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDANGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAISVSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDDLLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSIWPGKDYYNPRESEPNSWEDTMRDELDRRKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDNSRGTTIQDSFSRGSSFQDIPLLLPQEADGPDAENEGPKLNGLVPVGSPLDQPSKISSSLPFSFRKIKVEPIGSDMPLKGFVDDLDHLDSHGKSSGDGKTHHHVKSSEFEWWEKQDREHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSRTEDSIHIAYCSLIEKAEHFIYIENQFFISGLAGDESIRNRVLEALYRRIMRAHREKKTFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGPNSMMHNLYDLLGSKVQEYISFYGLRSYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGSRDSEIAIVIEDNELINSYMGEQPWKAGKFCWSLRLSLWSEHLGLRPGQIDQIVDPVADSTYKDTWMATAKTNTAIYQDVFSCLPSDLINSRAGLRQSVAMWKEKLGHTTIDLGIAPEKLEVYKNGEIEKIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQKSALAGKFPIPAGDDYFHEVVSDFSYITCRILERFRWHFGFGRV 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2001738 2018937 + CmoCh17G003330.1 Cmo17g00333 400716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00333 1219 PANTHER PHOSPHOLIPASE D 96 1176 IPR015679 -
Cmo17g00333 1219 CDD PLDc_vPLD1_2_yPLD_like_1 435 580 - -
Cmo17g00333 1219 CDD PLDc_vPLD1_2_yPLD_like_2 835 1019 - -
Cmo17g00333 1219 PIRSF PLD_euk 118 1177 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cmo17g00333 1219 Pfam Phospholipase D Active site motif 542 569 IPR001736 GO:0003824
Cmo17g00333 1219 MobiDBLite consensus disorder prediction 188 218 - -
Cmo17g00333 1219 SMART PH_update 281 409 IPR001849 -
Cmo17g00333 1219 Pfam PLD-like domain 848 1024 IPR025202 -
Cmo17g00333 1219 Gene3D - 305 405 IPR011993 -
Cmo17g00333 1219 Gene3D Endonuclease Chain A 430 667 - -
Cmo17g00333 1219 Coils Coil 163 183 - -
Cmo17g00333 1219 PANTHER PHOSPHOLIPASE 96 1176 - -
Cmo17g00333 1219 SUPERFAMILY PH domain-like 311 405 - -
Cmo17g00333 1219 SUPERFAMILY Phospholipase D/nuclease 815 1025 - -
Cmo17g00333 1219 SUPERFAMILY Phospholipase D/nuclease 387 661 - -
Cmo17g00333 1219 SMART pld_4 975 1002 IPR001736 GO:0003824
Cmo17g00333 1219 SMART pld_4 542 569 IPR001736 GO:0003824
Cmo17g00333 1219 MobiDBLite consensus disorder prediction 1 22 - -
Cmo17g00333 1219 Gene3D Endonuclease Chain A 798 1034 - -
Cmo17g00333 1219 ProSiteProfiles PH domain profile. 316 407 IPR001849 -
Cmo17g00333 1219 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 975 1002 IPR001736 GO:0003824
Cmo17g00333 1219 CDD PH_PLD 258 405 - -
Cmo17g00333 1219 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 542 569 IPR001736 GO:0003824
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01217 Cmo17g00333 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00333 Cmo-Chr17:2001738 Cmo03g00677 Cmo-Chr3:5991150 2.50E-18 dispersed
Cmo17g00333 Cmo-Chr17:2001738 Cmo05g01108 Cmo-Chr5:8832121 0 wgd
Cmo17g00333 Cmo-Chr17:2001738 Cmo08g01217 Cmo-Chr8:7720766 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00333 K01115 - csv:101211856 2130.14