Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00334 ATGGTGCTGTTTCCGGGAGTAATTGAAGGAATGGTCAGAAACATGTCGATAAAGAAAAAGAGTAACGAAGACGGCGAGAAAGAAGCGGCTCGAGAAATGGCGAAAGAGGCGAAAAGGAACAAATCCATGATTTGTTTATCCGGAAGTGTTAAAACCAGCAAGTTCGATGATATGGCTTATGTTTGCACCAAAAGAGGAAATAAAGGAATCAATCAGGATTCCCTTGTTGTCTGGGAGGACTATGGTTGCCAAGGAGACGTAGTTTTCTGTGGGATCTTTGATGGACATGGTCCTTGGGGCCACATGATTAGCAAACAGGTCAGAAAGTCTCTGCCTCTTGAATTGCTGACCAATTGGCAGCAAAACCTTTCCATGGAAGCCGACCAAAACCTTTTTCCTTTCAACATATGGAAGCAATCTTGCTTAAAATCATATGCCGCCATTGATGAGGAGCTCAAGCAACACCCTCGCATTGATTCCTTTTACAGTGGCACAACCGCTTTAACTGTGGTTAAACAGGGCCGAAATCTTGTGGTTGCAAATGCTGGCGATTCAAGAGCTGTGTTGGCGGTAACTTCTGATGACGGCTGCTTGAAACCAGTTCAACTCTCCGTTGATTTCAAACCTAATTTGCCTGAGGAAGCTGAGAGAATAAAACAATCGAGAGGGCGAGTGGTATGCTTAAAGGACGAACCGGGGGTCTACAGAGTGTGGACCCCCAACTCGGGCACGCCAGGTTTGGCCATTTCCAGAGCTTTCGGCGATTACTGCACCAAACAGTACGGCCTCATTTCTGTGCCTGATGTTAGCCACCGAACCATTACCTCTGGAGATCAGTTCGTCATTGTGGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCGGTTCATATAGTTTCTTCAACGTCAAATAGGGAAATGTCGGCCAAAAGACTAGTGGACTGTGCTGCTCGTGCATGGAAATCAAAGAAACGAGGCATTGCAAGAGACGACATGTCGGCTATTTGCCTCTTTTTTAATGCTTCCCCCACAGAAAATGATCGAGACCTAAATATATAG 1065 46.1 MVLFPGVIEGMVRNMSIKKKSNEDGEKEAAREMAKEAKRNKSMICLSGSVKTSKFDDMAYVCTKRGNKGINQDSLVVWEDYGCQGDVVFCGIFDGHGPWGHMISKQVRKSLPLELLTNWQQNLSMEADQNLFPFNIWKQSCLKSYAAIDEELKQHPRIDSFYSGTTALTVVKQGRNLVVANAGDSRAVLAVTSDDGCLKPVQLSVDFKPNLPEEAERIKQSRGRVVCLKDEPGVYRVWTPNSGTPGLAISRAFGDYCTKQYGLISVPDVSHRTITSGDQFVIVATDGVWDVMSNQEAVHIVSSTSNREMSAKRLVDCAARAWKSKKRGIARDDMSAICLFFNASPTENDRDLNI 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2018961 2023608 + CmoCh17G003340.1 Cmo17g00334 400717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00334 354 Gene3D - 26 343 IPR036457 -
Cmo17g00334 354 PANTHER ALPHABET, ISOFORM E-RELATED 1 349 - -
Cmo17g00334 354 ProSiteProfiles PPM-type phosphatase domain profile. 58 341 IPR001932 -
Cmo17g00334 354 SMART PP2C_4 46 339 IPR001932 -
Cmo17g00334 354 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 349 - -
Cmo17g00334 354 Coils Coil 20 40 - -
Cmo17g00334 354 Pfam Protein phosphatase 2C 83 318 IPR001932 -
Cmo17g00334 354 CDD PP2Cc 58 341 IPR001932 -
Cmo17g00334 354 SUPERFAMILY PP2C-like 56 342 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01059 Cmo-Chr12:9784265 Cmo17g00334 Cmo-Chr17:2018961 1.64E-156 dispersed
Cmo17g00334 Cmo-Chr17:2018961 Cmo16g01053 Cmo-Chr16:7378460 6.98E-113 dispersed
Cmo17g00334 Cmo-Chr17:2018961 Cmo05g01107 Cmo-Chr5:8818065 5.63E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00334 - - csv:101214034 603.208