Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00337 ATGGGTGTTTTCACGTACGAAAATGAGGTGACCACCGTCATTCCTCCGGCCAAGTTCTTCAAGGCTTTTATTCTTGATGCCGACCGACTTTACCCCAAGATCGTGCCACATCAGCCCAAAACTGAAGTTGTCGAAGGAGATGGCGGTCCCGGAACTATCAAGATTATCACCTTCAGTCACGGCGAGCAAGTGAAATCCATAAAGCACAGGCTGGACGTAGTGGACGAAAAATCGTTGACTTACAAATACACGGTGTTAGAAGGGGAGATTTTATCAGACAATATAGACCAAATTTCAAAGGAATTGAAGGTAACGGCGGGACCTGACGGAGGATCCATTTTGAAGAGCGTAAGCATTTACCACACCAAAGGAGACCACCAAATCGACGAGCAGAAGCTCAAGATCGGCGAGGAAAAGGGATTGGGCCTTCTCAAAGCCGCCGAGGCCTACCTCCTGGCCAACCCTGCTGAATATAACTAA 480 48.12 MGVFTYENEVTTVIPPAKFFKAFILDADRLYPKIVPHQPKTEVVEGDGGPGTIKIITFSHGEQVKSIKHRLDVVDEKSLTYKYTVLEGEILSDNIDQISKELKVTAGPDGGSILKSVSIYHTKGDHQIDEQKLKIGEEKGLGLLKAAEAYLLANPAEYN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2039548 2040919 + CmoCh17G003370.1 Cmo17g00337 400720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00337 159 SMART Bet_v_1_2 1 154 IPR000916 GO:0006952
Cmo17g00337 159 Gene3D - 2 158 IPR023393 -
Cmo17g00337 159 PANTHER - 1 158 - -
Cmo17g00337 159 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 158 - -
Cmo17g00337 159 Pfam Pathogenesis-related protein Bet v 1 family 1 153 IPR000916 GO:0006952
Cmo17g00337 159 SUPERFAMILY Bet v1-like 2 156 - -
Cmo17g00337 159 CDD Bet_v1-like 4 151 - -
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cmo17g00337 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00337 - - - csv:101214193 238.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01222 Cmo17g00337 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00337 Cmo-Chr17:2039548 Cmo04g00305 Cmo-Chr4:1520690 6.54E-13 dispersed
Cmo17g00337 Cmo-Chr17:2039548 Cmo08g01222 Cmo-Chr8:7757470 3.82E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g128 . . . . . . . . Cmo08g01222 Cmo17g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01542 . . . . . . Bpe13g00680 . . . . . Cma08g01251 Cma17g00349 . Car17g00320 Cpe12g00298 . . . . . . . . . . . . . . . Lsi09g01462 . . Cme11g02050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00337 Cmo_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.064427 0.0