Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00339 ATGGCTCTCTTTTGCTTGTGGGGATATTTGAGCCTTTGGGGAATGGATCCCAGCCACACGAAGGGTACGATGCCTACTTCCACTTCAATTTCTGCTAGAAAGGCTGCCGATATGGGTTGTGATCAGTTCCCGGCGGGCCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTGCAGAATTGCTGCTATGCCGTGACGAAATGCAATCGGGCTGAGATTGCATTATCCATGCTTCGTGAGAACAAAAATGGATTTGATATTGTGTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGTCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCAGATGATGGAAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGACTACCTGATCAAACCGGTTCGAATCGAAGCGCTCAAGAACATATGGCAACATGTGGTTCGGAAGAGAAAGAGCGAATGGAAGGATTTAGAGCAATCCGGAAGCATGGACGATGGAGATCGGGATCAAAATGTATCTGAAGGTGCAAATTATTCATCTTCGGCGTATGATGGAAGTTGGAACAGCTCGAAGAGGAAGAGGGATGCTGAAGAAGAGCTCGAGGAGAGGGACGATACATCGGCGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAATTTGTCATAGCAGTTGATCAGCTAGGCATTGACAAGGCTGTCCCTAAAAAGATACTGGAGTTGATGAACGTTCCGGGGCTTTCTCGAGAAAACGTTGCGAGTCACCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCGCCACATCCAAGTAATCTGAACAATTCTTTTATGAACCCTCAAGATCATCCTCCTTTTGGGTCAATGGCTTCATCATACAATGGCATTGATCTTCAGACGCTTTTGGTCACCGGTCAACTCTCGCCGCAAAGTCTCGCTGCCCTCCAAGCCACCGGACTTCGTCGACCTACCGCGAAATCTAGCTTACCGATGGCCCTTGTTGATCAGAACAACATATTCAGCTTTGAAAATCCAAAGCTGAGGTTTGGTGAGGACCAAACACAACACCTGAACAACACTAAACCTGTAAGCTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCACCCTTCTGTGCAGACTCAGAGGAACATGAACATGAACATGAACATGAACATGAACATGGCACTCAATATCAAGAGCGAACATGGTGGCACTCAGCTAATGCATTTGTCTCAGCAGCAAACTGTAGGACAGACTCTAAATAACTCTAATGTTACCCACCTACCTGGAATTCCATCGACATTAAGGAACCTGATCATATCAGGTAGCGTTACAACGGGAAACGGGACTGCTGATAATAGCCACGGACCTCGATACAACCTAGTTTCGCCCACGTCGGTTATGGTGAACTATCCAATGAGCCAAACCACAGAAGTGTTTCAAGAAGAAATGAACTCAAATCTAAAAGTATCGAGCGGAGTAATGTCGAGTTATGGTGTTTTTAGTGACTTGCATATGCAGAAATCCCATGACTGGGATTCTCAAAATGTAAGCACTTTGGCCTTTGGTACTCCACACCATGGAAACTTCATTCACCATAGCTTTGATATCTCACCCTCATCTTTGATTCATCACGGTTTTCCTTCAAGCCAAACAAATGGAGAGAATCATAACTCATCAGTCAATGGGAAGACGAACTTTTCGTTTTTGGATTCAACTCAACCCGGGATTCCTCAAAGTGTCGACCATAACTCGTTTTTCGATCCCGGGGAGGTCAAGAACCAGATCATCCCTGATGCAAGCTATCAAACCGACCTGTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAAGAACAACAAGAAGACAACGGATCGGTCGACTTTAGCGGATACCAAACGGAGAATATTTGTGTTTAG 2025 45.28 MALFCLWGYLSLWGMDPSHTKGTMPTSTSISARKAADMGCDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALKNIWQHVVRKRKSEWKDLEQSGSMDDGDRDQNVSEGANYSSSAYDGSWNSSKRKRDAEEELEERDDTSALKKPRVVWSVELHQQFVIAVDQLGIDKAVPKKILELMNVPGLSRENVASHLQKYRLYLRRLSGVSPHPSNLNNSFMNPQDHPPFGSMASSYNGIDLQTLLVTGQLSPQSLAALQATGLRRPTAKSSLPMALVDQNNIFSFENPKLRFGEDQTQHLNNTKPVSLFHGIPTKMEPKQLANMQHPSVQTQRNMNMNMNMNMNMALNIKSEHGGTQLMHLSQQQTVGQTLNNSNVTHLPGIPSTLRNLIISGSVTTGNGTADNSHGPRYNLVSPTSVMVNYPMSQTTEVFQEEMNSNLKVSSGVMSSYGVFSDLHMQKSHDWDSQNVSTLAFGTPHHGNFIHHSFDISPSSLIHHGFPSSQTNGENHNSSVNGKTNFSFLDSTQPGIPQSVDHNSFFDPGEVKNQIIPDASYQTDLLSEDFGQDELLGVFLKQEQQEDNGSVDFSGYQTENICV 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2056494 2062433 + CmoCh17G003390.1 Cmo17g00339 400722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00339 674 MobiDBLite consensus disorder prediction 204 222 - -
Cmo17g00339 674 SUPERFAMILY CheY-like 46 170 IPR011006 -
Cmo17g00339 674 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Cmo17g00339 674 MobiDBLite consensus disorder prediction 170 187 - -
Cmo17g00339 674 Gene3D - 47 180 - -
Cmo17g00339 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 509 - -
Cmo17g00339 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 509 648 - -
Cmo17g00339 674 SUPERFAMILY Homeodomain-like 225 284 IPR009057 -
Cmo17g00339 674 MobiDBLite consensus disorder prediction 170 222 - -
Cmo17g00339 674 MobiDBLite consensus disorder prediction 188 203 - -
Cmo17g00339 674 Pfam Myb-like DNA-binding domain 229 279 IPR001005 -
Cmo17g00339 674 ProSiteProfiles Response regulatory domain profile. 48 163 IPR001789 GO:0000160
Cmo17g00339 674 Gene3D - 224 286 - -
Cmo17g00339 674 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 226 283 IPR017930 -
Cmo17g00339 674 CDD REC_typeB_ARR-like 49 163 - -
Cmo17g00339 674 Pfam Response regulator receiver domain 49 157 IPR001789 GO:0000160
Cmo17g00339 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 509 IPR045279 GO:0009736
Cmo17g00339 674 PANTHER TWO-COMPONENT RESPONSE REGULATOR 509 648 IPR045279 GO:0009736
Cmo17g00339 674 SMART REC_2 47 159 IPR001789 GO:0000160
Cmo17g00339 674 PIRSF RR_ARR_type-B 25 658 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01636 Cmo17g00339 CCT
Cmo14g01636 Cmo17g00339 ECH
Cmo08g01225 Cmo17g00339 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01636 Cmo-Chr14:12981700 Cmo17g00339 Cmo-Chr17:2056494 0 wgd
Cmo17g00339 Cmo-Chr17:2056494 Cmo06g01548 Cmo-Chr6:10900168 0 wgd
Cmo17g00339 Cmo-Chr17:2056494 Cmo08g01225 Cmo-Chr8:7770459 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11373 PF00072 Response_reg 1.00E-21 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00339 - K14491 cmos:111460165 1345.49