Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00347 ATGAAAATCAACATCGATAGGGAGGCACGAAAAGTTGCGGTTGATAATCGAATTCCTCTCCGGAATTACTTTCGGATCGCCGATAATCTCTTAAAACAGGCTGATATTTATCGGGAGGAGAATAATGTTGTGGATTTGTTCATTATACTTCTTAGGTTTTCAAGCTTGGTTTCCGAAACCATACCTCGGCATCGTGATTACCAGGCTTTTTTCCCAAAGGAGAAGATATTTTACAAGAAGAAACTGCTGAGTGTAGTAGATGAACTTGAGTCCTTGAAACCTGAATTTGATCGCCGAGTAAATGAACTGGAGAAAGTGTCTGGACGACCTCGTCTTCCTCCATCCGATGAGCAGAGAGGAGTTTCAAACAGTCTGCGGCCGTCTTCTATGATACAGCCCTATGCAAATGGAAACTATTCATTGGTCTTGGATCAAAAGCAGCATGCCAATTCACAGCTACAATCTTCATGGAGGTATCATGATGGCCGAGGTCAAGTTTCTCAATCAAGTTACTCAAGGATTGAGAATAGGTTATCAAATCTGTCTCTTAATGTACCACTTCCGAAACCCGAAACTCTGTCTAGACACTCTATTTTGGGACCTAGTGGTTTTCAGGGCCAATGGAAGGGACCAAGTACAGATAAGATTCACTATCCAAGAAATCAGGACTTTACTCCTTTCGATTCAAGACTGAATCAAATTGAACAATGTGATCTAGTGGCGCATAAAGATAGTGGTCCAGGAGGTGTCGTGTCGATGATGGAATCAGTGCTCTCACTAGATGATGGTAGATGGCCTCATCCTGCAGACATTTCTATTACTCCATTGATAACAGAAGTAAGGGAGGATCCTTTCCCATTGGTTAAACAACCTTCTCCTCCTCCTGTACTTGCAAAGGTTCAGCAGGAATATGCGGCAATTCCCTCATCTAAAGTTGCAGATCCAAGGCCTGGAGTGGCAAAACAATCGTTGGACGAGTCTGAGTCGTTCCAACGCTTACACATTCCAGTAAAAATGCTGGATGATTTCTTGAGATTGGCTCGAGAAAATACAAATAAGAATCTGGAGACTTGTGGTGTTTTAGCTGGCTCTCTGAAAAACAGGGTTTTTTACATATCTACGCTCATAATCCCAAAGCAAGAATCAACATCAGATTCCTGCCAGACGTTGAACGAAGAGGAAATATTCGAGGTTCAAGACAGATTATCACTTTTTCCCCTTGGTTGGATCCATACACATCCATCACAAACCTGTTTCATGTCATCTGTGGATTTGCACACGCATTACTCGTACCAGATTATGCTACCAGAAGCAATTGCAATCGTCATGGCTCCGACCGATGCGTCAAGCCCATATGGAATATTTCATTTGTCCGATCCAGGTGGCGTGTCGGTCATCCGCAACTGCCAACAGCGTGGATTTCATCCCCACGAGGAGCCTGAAGATGGGAGTCCACTCTATGAACACTGCTCTCATGTTTTGATGAATCCGAATGCGAAGTTTGACGTTACCGATTTGAGACTGCTCTGTAAATTTTGTAATTTACAAATCCAGTTGAGTTACTTCCATTGTTGGGAGACTTCAGGCAGTGGCCATGGCCATTGTTGTGCCGAGATCTCACTGCTTGAAGGCTTCTCTTTGTTGAAAGAATAG 1653 43.32 MKINIDREARKVAVDNRIPLRNYFRIADNLLKQADIYREENNVVDLFIILLRFSSLVSETIPRHRDYQAFFPKEKIFYKKKLLSVVDELESLKPEFDRRVNELEKVSGRPRLPPSDEQRGVSNSLRPSSMIQPYANGNYSLVLDQKQHANSQLQSSWRYHDGRGQVSQSSYSRIENRLSNLSLNVPLPKPETLSRHSILGPSGFQGQWKGPSTDKIHYPRNQDFTPFDSRLNQIEQCDLVAHKDSGPGGVVSMMESVLSLDDGRWPHPADISITPLITEVREDPFPLVKQPSPPPVLAKVQQEYAAIPSSKVADPRPGVAKQSLDESESFQRLHIPVKMLDDFLRLARENTNKNLETCGVLAGSLKNRVFYISTLIIPKQESTSDSCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDASSPYGIFHLSDPGGVSVIRNCQQRGFHPHEEPEDGSPLYEHCSHVLMNPNAKFDVTDLRLLCKFCNLQIQLSYFHCWETSGSGHGHCCAEISLLEGFSLLKE 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2094151 2099416 - CmoCh17G003470.1 Cmo17g00347 400730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00347 550 Pfam USP8 dimerisation domain 8 99 IPR015063 -
Cmo17g00347 550 SMART pad1_6 332 460 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo17g00347 550 PANTHER AMSH-LIKE PROTEASE 2 507 - -
Cmo17g00347 550 MobiDBLite consensus disorder prediction 117 132 - -
Cmo17g00347 550 SUPERFAMILY JAB1/MPN domain 332 463 - -
Cmo17g00347 550 Gene3D Cytidine Deaminase, domain 2 318 508 - -
Cmo17g00347 550 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 2 507 - -
Cmo17g00347 550 MobiDBLite consensus disorder prediction 103 132 - -
Cmo17g00347 550 ProSiteProfiles MPN domain profile. 333 463 IPR037518 -
Cmo17g00347 550 CDD MPN_AMSH_like 333 507 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cmo17g00347 550 Gene3D - 3 112 - -
Cmo17g00347 550 Coils Coil 86 106 - -
Cmo17g00347 550 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 329 436 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00347 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - csv:101209152 928.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01232 Cmo17g00347 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00012 Cmo-Chr5:47777 Cmo17g00347 Cmo-Chr17:2094151 4.05E-83 dispersed
Cmo13g01061 Cmo-Chr13:8822188 Cmo17g00347 Cmo-Chr17:2094151 1.90E-119 dispersed
Cmo17g00347 Cmo-Chr17:2094151 Cmo18g00038 Cmo-Chr18:219910 3.32E-160 dispersed
Cmo17g00347 Cmo-Chr17:2094151 Cmo08g01232 Cmo-Chr8:7799805 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g103 Blo01g00056 . . Bda08g00309 . . . Bma05g01019 Cmo08g01232 Cmo17g00347 . . . . . . . . . . . . . . Cla06g00441 Cam06g0468 Cec06g0474 . Clacu06g0455 Cmu06g0456 Cre06g1231 . . Cone7ag0112 Cone4ag0116 . Csa06g01758 Chy11g01553 . . . . . Bpe05g00819 . . . Sed04g1761 . . Cma08g01262 Cma17g00357 Car08g01132 Car17g00328 Cpe12g00309 Cpe17g00053 Bhi12g01907 Tan06g2735 Cmetu11g2266 Lac11g0914 Hepe03g0061 . Lcy12g0785 . . . . . . . Lsi09g01472 . . Cme11g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008620 2 1 1 1 1 1 2 0 1 1 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00347 Cmo_Chr17 FPKM 25.663813 30.44721 3.745492 3.11084 1.741484 1.950827 1.934512 4.66159 4.265604 4.316773