Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00349 ATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACATTGTCCTTGTTCATTACCGCGAAACAAAAGAGTGGCAGAGTTCTCCATCCACGTCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAGCTCATTGGCTTTTATCGGAAGAACTAGATTCCAGGGCTACTAATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGGTTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACGAACGAGCCTCTCAAACCTGCTATGCCTAAAGAAGATAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAGTGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAACTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTTGTTGGACAATTTGTTAAACAATGGATTGCAAAGTCAGGATAGCTTAGGACAATGGATAAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCAATCTTCGGTGGAGCAAATTTTTAACATAACTGAGGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACAAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCGAAGTCCAATATATCTGTTGTTTGTGGTGATACTAGTATTAATGCTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTAGAACCACATTCACCGGGACTTGTACATTTATACCTGAGCTTAGATGGTCACAAACCTATTAGTCAAGTCCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACTTCAGAACAGATCCTCAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCTTGAGCATCATGTCAACTAAATTGTCACCCACTGCCCTGAACGACGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACAAGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGACTGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCGAAGCCAAGCTTGATCACTGATCCCACATCAAAGAACCCTCTGGGATATACAGCAGCAGATCTTGCATCTATGAATGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCGCATTTTGAAGACATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAGTACAATACCTGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTATTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCTCATATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGACTTCAAGTTGCACCAGCTGAAGTGACAGAAGATCAGGAAACTGGCATGGAAGAGGACTTCTACCGCGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATACGAAGAGCTTTCACATCCTGATATGAAAATGAATGGCTGA 2745 41.82 MSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKEWQSSPSTSMNSNSGSVSNPSAHWLLSEELDSRATNVYSVGGNELSEPSDTTTVMVHEQRLHEINTLEWDELLVTNEPLKPAMPKEDKLSCFDQQNQVPISVANKIFGVITSFNNPVESTGSANSIGSVNMSLMGGQTNLNVESRESIPINLLDNLLNNGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHQSSVEQIFNITEVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSNISVVCGDTSINADFVQPGVYRCLVEPHSPGLVHLYLSLDGHKPISQVLNFEYRAPLLQVPEVTSEQILKWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNDAKKLAVKTSGISDGWIYLLKSVTENKTPIPQAREGVLEMILRSRLRDWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASMNGFNGLAAYLSEKALVSHFEDMSLAGNVSGSLETSTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIIAAMKIQHAFRNFETRKKMAAAAHIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEDQETGMEEDFYRVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKMNG 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2121689 2132160 + CmoCh17G003490.1 Cmo17g00349 400732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00349 914 ProSiteProfiles IQ motif profile. 869 897 IPR000048 GO:0005515
Cmo17g00349 914 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cmo17g00349 914 SUPERFAMILY Ankyrin repeat 564 664 IPR036770 -
Cmo17g00349 914 Gene3D - 528 665 IPR036770 -
Cmo17g00349 914 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Cmo17g00349 914 Pfam IPT/TIG domain 366 451 IPR002909 -
Cmo17g00349 914 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cmo17g00349 914 ProSiteProfiles Ankyrin repeat region circular profile. 602 627 - -
Cmo17g00349 914 Gene3D Immunoglobulins 358 455 IPR013783 -
Cmo17g00349 914 SMART ANK_2a 602 631 IPR002110 GO:0005515
Cmo17g00349 914 SMART ANK_2a 641 670 IPR002110 GO:0005515
Cmo17g00349 914 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Cmo17g00349 914 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Cmo17g00349 914 Pfam Ankyrin repeats (3 copies) 564 630 IPR002110 GO:0005515
Cmo17g00349 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 908 - -
Cmo17g00349 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 908 - -
Cmo17g00349 914 SMART iq_5 766 788 IPR000048 GO:0005515
Cmo17g00349 914 SMART iq_5 867 889 IPR000048 GO:0005515
Cmo17g00349 914 SMART iq_5 789 811 IPR000048 GO:0005515
Cmo17g00349 914 SMART iq_5 713 735 IPR000048 GO:0005515
Cmo17g00349 914 ProSiteProfiles IQ motif profile. 767 794 IPR000048 GO:0005515
Cmo17g00349 914 SUPERFAMILY E set domains 365 452 IPR014756 -
Cmo17g00349 914 Gene3D - 766 814 - -
Cmo17g00349 914 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00349 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1489.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo14g01600 Cmo17g00349 CCT
Cmo08g01236 Cmo17g00349 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00771 Cmo-Chr16:3866459 Cmo17g00349 Cmo-Chr17:2121689 8.76E-18 dispersed
Cmo17g00349 Cmo-Chr17:2121689 Cmo19g00274 Cmo-Chr19:2003464 2.53E-40 dispersed
Cmo17g00349 Cmo-Chr17:2121689 Cmo08g01236 Cmo-Chr8:7820141 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11377 PF03859 CG-1 2.30E-45 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00349 Cmo_Chr17 FPKM 317.504944 331.917542 1.111767 1.491575 0.0 0.0 0.0 0.377236 0.0 0.0