Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00355 ATGACTTACTTTAGTGCTATGACTCCCTCCATTTTCTCATCTCTAGCATCCACATCGCCTTCTACTGCGATCCTCTCTACTTCGCATGCGAACTGGATTCCGCTTCATCTTCGATACCTAAGCAAGATTCAGATATTGAAAAAACAAAGCATGTCTAGTAAGAAGGAAGAAAAGTCACAAGCAGCTGCCGAAAGGATTAAGGCTGCGGCTCTTAGTGCTGCAAAAGGCCTTAGTCGTGCTCAGGCTGAACGAGCAGCTACGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGGCCGAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTGGGTGAAAGAAAGGACATTAAGGTCTCCATGTCTAGTGCGGGCGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGTCGGGACACTGGACATATGAATGCAAAAATGAACGAGTTTACATATCCCGACCATCTCGAACTCAACAACTCAAAAACCCGAAGTTGAGGATGAAGATGGCAGTCTCATTAGAGCTGGACAACCCAGATTCTGGTGATGAGGAGAAGAAGACCAAGAAGAAGCAATTGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCGAACCAAAATCCAATAGCGATAGCGAGGCTTCTGTATTTGAAACCGATAGTGGGTCATCATCAGTTACTGGATCTGATGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCGTCTGATTCGGAGTCGGAAAGGAGTCGAAGAAGGAGAAGGAGAAAGAAGCAGAAGAGGGGGAGGAGGAAGAGGAGGTACAGCTCGTCTTCTGATTCTTCTGATTCAGACTCGGGGTCTGAATCAGAGTCTGATTCTGATCATGAACGTAGTAGGAGGAAGAGTCGAAGGCACAGCAGAAAACGCTAG 957 45.66 MTYFSAMTPSIFSSLASTSPSTAILSTSHANWIPLHLRYLSKIQILKKQSMSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSSDSDSGSESESDSDHERSRRKSRRHSRKR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2165187 2167347 + CmoCh17G003550.1 Cmo17g00355 400738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00355 318 MobiDBLite consensus disorder prediction 224 258 - -
Cmo17g00355 318 MobiDBLite consensus disorder prediction 266 282 - -
Cmo17g00355 318 Pfam Zinc knuckle 142 179 - -
Cmo17g00355 318 PANTHER ZCCHC10 PROTEIN 51 303 IPR039715 -
Cmo17g00355 318 SUPERFAMILY Retrovirus zinc finger-like domains 141 163 IPR036875 GO:0003676|GO:0008270
Cmo17g00355 318 MobiDBLite consensus disorder prediction 189 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00355 - - - cmax:111499120 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00355 Cmo-Chr17:2165187 Cmo08g01240 Cmo-Chr8:7853031 1.82E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g86 Blo01g00049 Blo12g00086 Bda03g01172 Bda08g00316 Bpe04g01110 . Bma04g01133 Bma05g01014 . Cmo17g00355 . . . . . . . . . . . . . . Cla06g00433 Cam06g0459 Cec06g0465 Cco06g0464 Clacu06g0446 Cmu06g0447 Cre06g1223 Cone14ag0725 Cone15ag0735 . . . . . . . . . . Bpe05g00812 . . . Sed09g0283 . . . Cma17g00365 Car08g01142 Car17g00338 . . Bhi12g01923 Tan06g2748 Cmetu11g0617 . . . Lcy12g0800 . . . . . . . Lsi09g01485 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004669 2 1 2 2 2 1 2 1 1 0 1 1 1 1 1 1 1 2 1 1 1 3 2 1 1 1 1 5 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00355 Cmo_Chr17 FPKM 3.827557 4.562404 1.740476 1.471409 12.591957 10.198912 12.661813 0.205866 0.243435 0.156592