Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00359 ATGGATTTGGAGTTATTACGCCAGTGGGAAGTGTTGAATATTGATCCGTTGTTGTTGGTTTTTATGGGAACTCCACCAGTAGAGGAGCTTCTGAGGAAGATACAAGAGCTGGAGGAAGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCGGATTCCAATTCTGACCACCAAATTCGCCACCATCATCATCACCATCAGCGCTCTCAATCGATATCGCCTCAGCGTTCTAGGTTTGCTACAGCTCGGAGAAGAGGCGGCGCTGCTGGAGGTTTTGACGGCGCTGCAGCGGCGTGGAAGAGAGGCTCTTCGTCGTTTCGATATTCTTCTCCACTTCAGAGAGAGAGTAGGACTTGTGAGCCTTTAAATGCCGCCGCCAGTGTCGGAACCGGCGGCGGCTCTGGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGTCTATTAGATTTGATGGGTTCTTCAATAGCTACCTGAATATTGCCTTCGTTTTGTTGAATGTTAATCTATGTAGGAACCGAGCTGCTGAAAGCGTGTATGGATATTCTGCGGTGGAGGCTCTTGGTCAGGACGCCATTGAGCTTCTAGTCGATCCTGAGGACTTCGCCGTTGCGAATGATGTAACTCTTCGTGTCATGGGTGGGGAGAATTGGACTGGTCAATTACCTGTAAAGAACAAGATGGGGCAAAAATTTATGGTTGTTGCCACTAACACTCCATTCTATGACGATGGTGCATTGGTTGGGATTATCTGTGTATCAAGTGATTCACGGCCATTTCAAGAATTGAAGATTCTTTTAGCATCAGGTTCTAAACAGCAGGATGCAGATTTGAACACGATCCGTTCAAGAATCCCGGTTTCAGCTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTTGCAATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACGGTTTGGATCGTGAAGGTGGAAGTGCAGATAGTTACCACTCTGATCATGGCTTTCCAGATGCAGTTCTTTGTGACCATCGGGAGGATGCAAATTCAAGTGGAGCTAGCACGCCTCGGGGCGATTCCACGGCTCATGGTGCATTGTCCCATGTTGAGGAGAAGTTGTCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTGCAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAAGCAGAAGAGTGGATCACTAAGAAAGGCATATCTTGGCCATGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAGAACAACCCGTATTGTTTGGCCCTGGGTACAAATTGATCAAGAAGCTGAACCAGCAAATCATAAAAGTTCTTCTTCAGCTGGGAAACCAGAAATGCAGCAAAATGATGGTCATCGAGCAGCCAATAACGAGGCGTCGGGATCTTGGTCATCATTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTGCCAGTAGTAGTGCTATCAACAAGGTCGACACGGACTTTGACTGCTTGGATTATGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCGGACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAACATTCTTCTCTTCATGGGAGTTGTGACTTCACCTCAGCGTCTCTGTATTGTCACAGAATTTCTTCCGCGGTTTGTTCTCGACTTCCGTTCTTGGTTTAAATTAAGAAGCATTGTTCATAGGCTGATTGAAGTATCTGGTACCTATAAAAACAGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACGGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACGTTGCGAGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCTTCGAACCTCTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACGACTAAGACCGGAAAGGGCACGGTAAGCCTGACATTTTCTTGTTTGCAAGTTGCATACAAGCCATTCGATTCTAGACCTCAATGGATGGCGCCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCTGACATATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAAATCCCTTGGGAAAATCTCAATACAATGCAGGTACTAATTACTTTTCAAGTGATATCTAGAAAGATCCCTTGTAAGCTGAATGTTCTTCCATTTGGGCATTCCATGCAGCAGCCAAGTTTCTGTTTGTTCTTGTGCCAAACGTTGGCATTGTGGATGATGTTATATGTGATTGGTGCTGTTGGGTTCATGAACCAACGACTTGAAATCCCTAAAGACGTGGATCCACAGTGGGCTTCTATTATTGAAAGCTGCTGGCACAGGTACATAGAATTGGCTTTATTTATAATAAATGGTTCAAATTCTAGTTTCGCATCTGATTTCTTGACTTGTTCCATTATGGTTCTGATGGAAAGGCTTAGAGAACTGCATAGAAAGTTTACTATTCAATTACAAGCAGCCCGTAACGGTGGAGACAATATCAGTCAAAAGGAAACATAA 2772 44.73 MDLELLRQWEVLNIDPLLLVFMGTPPVEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIRHHHHHHQRSQSISPQRSRFATARRRGGAAGGFDGAAAAWKRGSSSFRYSSPLQRESRTCEPLNAAASVGTGGGSGPAAVNFTNKQYLNILQSMGQSIRFDGFFNSYLNIAFVLLNVNLCRNRAAESVYGYSAVEALGQDAIELLVDPEDFAVANDVTLRVMGGENWTGQLPVKNKMGQKFMVVATNTPFYDDGALVGIICVSSDSRPFQELKILLASGSKQQDADLNTIRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENGLDREGGSADSYHSDHGFPDAVLCDHREDANSSGASTPRGDSTAHGALSHVEEKLSGKLVRDSGDEVAGKPTIQKILSSKAEEWITKKGISWPWKGTEQEGGSETRTTRIVWPWVQIDQEAEPANHKSSSSAGKPEMQQNDGHRAANNEASGSWSSFNVNSTSSVSSCGSASSSAINKVDTDFDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFGQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRFVLDFRSWFKLRSIVHRLIEVSGTYKNSGSLFRLLQRNTGKLDWRRRVHMALDVARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTVSLTFSCLQVAYKPFDSRPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNTMQVLITFQVISRKIPCKLNVLPFGHSMQQPSFCLFLCQTLALWMMLYVIGAVGFMNQRLEIPKDVDPQWASIIESCWHRYIELALFIINGSNSSFASDFLTCSIMVLMERLRELHRKFTIQLQAARNGGDNISQKET 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2204776 2209598 + CmoCh17G003590.1 Cmo17g00359 400742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00359 923 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 58 620 - -
Cmo17g00359 923 SMART serkin_6 537 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00359 923 MobiDBLite consensus disorder prediction 337 353 - -
Cmo17g00359 923 CDD PAS 188 271 IPR000014 -
Cmo17g00359 923 Coils Coil 27 47 - -
Cmo17g00359 923 TIGRFAM sensory_box: PAS domain S-box protein 188 271 IPR000014 -
Cmo17g00359 923 Gene3D PAS domain 186 274 - -
Cmo17g00359 923 Pfam PAS fold 188 268 IPR013767 GO:0006355
Cmo17g00359 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Cmo17g00359 923 MobiDBLite consensus disorder prediction 56 100 - -
Cmo17g00359 923 CDD STKc_MAP3K-like 543 865 - -
Cmo17g00359 923 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 642 808 - -
Cmo17g00359 923 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 832 921 - -
Cmo17g00359 923 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 642 808 - -
Cmo17g00359 923 MobiDBLite consensus disorder prediction 337 364 - -
Cmo17g00359 923 ProSiteProfiles PAS repeat profile. 188 231 IPR000014 -
Cmo17g00359 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 187 271 IPR035965 -
Cmo17g00359 923 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 832 921 - -
Cmo17g00359 923 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 58 620 - -
Cmo17g00359 923 Gene3D Phosphorylase Kinase; domain 1 530 614 - -
Cmo17g00359 923 MobiDBLite consensus disorder prediction 462 495 - -
Cmo17g00359 923 ProSiteProfiles Protein kinase domain profile. 537 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00359 923 Pfam Protein tyrosine and serine/threonine kinase 537 791 IPR001245 GO:0004672|GO:0006468
Cmo17g00359 923 MobiDBLite consensus disorder prediction 464 495 - -
Cmo17g00359 923 Gene3D Transferase(Phosphotransferase) domain 1 643 868 - -
Cmo17g00359 923 SUPERFAMILY Protein kinase-like (PK-like) 518 865 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g01244 Cmo17g00359 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00359 Cmo-Chr17:2204776 Cmo10g01118 Cmo-Chr10:7735507 1.11E-88 dispersed
Cmo17g00359 Cmo-Chr17:2204776 Cmo08g01244 Cmo-Chr8:7873002 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74997 PF07714 PK_Tyr_Ser-Thr 2.40E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00359 - - bhj:120067055 1227.23