Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00362 ATGCTCCGGGGATTGATGAATCTGCTCTCCCTTTGCTGGAAGCCGTTCGGGCATGCTACTGAGAATTTGAGCTCTGTTGGAGTAATTGGAACCACTTGTGGTGGCAAAGATACTAAGGATAGCTTGCTCTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTTTCCATGGCTGTCGTACAGGCCAACCAAGTGCTTGAAGACCAGAGCCAGATTGAATCTGGTCCTTTTGGCACTTTCGTCGGAATCTACGATGGCCATGGCGGCCCCGATGCTGCTCGATATGTCTGCGATAATTTGTTTAGGCGTTTCCAAGATGAACAACGAGGAGTTGTGACTCATGAAACCATTCTGAATGCTTTTCGTCGAACAGAGGAAGGGTTCACAGCCGTTGTGTCAGACTTGTGGAATACTCGGCCCCAGATAGCAACAGTTGGGACGTGCTGTCTAGTAGGGGTGATACATGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCCGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAGTTATCAACAGAGCATAATGCAAATCTTGAGGATATCAGGCAAGAATTAAGAGACATGCATCCCAATGATCCTCAAATTGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGCGATGTGTATATGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCGGAACCAATAAATAAGCCTATATTGACTGCTGTACCTACGATTATTGCTCATCCTCTTCACCAAAACGATTCGTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCTGTGGAGATCGTCCATAATCATCCACGTGCGGGAAGCGCGAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTAGAAAACGAGAGATGCGATATTCAGATCTCCGAAAGATCGATAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGACCTCATATCCACAAGCAATGTCCTCCTAGATCAGCCATTATCAGTAAGAAGTGCTCTTGATCATTGA 1134 44.53 MLRGLMNLLSLCWKPFGHATENLSSVGVIGTTCGGKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTHETILNAFRRTEEGFTAVVSDLWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEDIRQELRDMHPNDPQIVVQRHGVWRVKGIIQVSRSIGDVYMKHAQYNNERINAKFRLPEPINKPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISTSNVLLDQPLSVRSALDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2221405 2226063 + CmoCh17G003620.1 Cmo17g00362 400745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00362 377 Gene3D - 47 362 IPR036457 -
Cmo17g00362 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cmo17g00362 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cmo17g00362 377 Pfam Protein phosphatase 2C 80 323 IPR001932 -
Cmo17g00362 377 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 377 - -
Cmo17g00362 377 CDD PP2Cc 56 353 IPR001932 -
Cmo17g00362 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cmo17g00362 377 PANTHER ALPHABET, ISOFORM E-RELATED 3 377 - -
Cmo17g00362 377 SMART PP2C_4 49 351 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00362 Cmo-Chr17:2221405 Cmo20g00737 Cmo-Chr20:3678588 8.56E-158 dispersed
Cmo17g00362 Cmo-Chr17:2221405 Cmo08g01248 Cmo-Chr8:7887291 6.64E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00362 K01102 - csv:101207284 710.679