Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo17g00365 | ATGGCGTCATCTGTTCATTCGAACTCCGATCGCGCGCGGGAGTCTTCAAGGAGGCAGAAGAAGAAGAAAAGCCACGGCAACAGAGATCATCATCAAAACCAGAACCATATTAAATGGAAGTCTCAAGCGCAGCAAGAAATTTACTCGTCCAAGCTGGTCCGAGCATTGAATCAAGTGAGGCTCAGTCCTCCGAACGAGGCGCCGCGCCGCGGCAGAGCCGTACGCGAGGCCGCTGACAGAGTCCTCGCCGTCGCTGCCAAGGGGAGAACCAGGTGGAGCCGAGCCATCTTAACGAACAGGCTGAAACTCAAATTCAGGAAGCCGAAAAGACAGAGATCGGCATCCACCGCCGGAAACAACCGCTCAAAGAAACCTAGAGTTAGCGTGTTGCGGTTGAGAGGGAAATCCTTACCGGCGGTACAAAGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTATCCTGGAAGAGGCTACCGATTACATAGCTGCACTTGAAATGCAAGTTCGAGCCATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGCCGCAGGCTCTAGCTCCGCCCCACCAAACTGA | 609 | 54.84 | MASSVHSNSDRARESSRRQKKKKSHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLSPPNEAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRSASTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSAPPN | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 2240071 | 2240679 | + | CmoCh17G003650.1 | Cmo17g00365 | 400748 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo17g00365 | 202 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 14 | 201 | - | - | |
| Cmo17g00365 | 202 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Cmo17g00365 | 202 | MobiDBLite | consensus disorder prediction | 104 | 127 | - | - | |
| Cmo17g00365 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 143 | 190 | IPR036638 | GO:0046983 | |
| Cmo17g00365 | 202 | CDD | bHLH_AtIBH1_like | 129 | 184 | IPR044549 | GO:0006355 | |
| Cmo17g00365 | 202 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 14 | 201 | IPR044660 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo10g01242 | Cmo-Chr10:12527421 | Cmo17g00365 | Cmo-Chr17:2240071 | 1.25E-53 | dispersed | |
| Cmo11g01293 | Cmo-Chr11:8782940 | Cmo17g00365 | Cmo-Chr17:2240071 | 1.02E-51 | dispersed | |
| Cmo12g01005 | Cmo-Chr12:9411423 | Cmo17g00365 | Cmo-Chr17:2240071 | 2.12E-09 | dispersed | |
| Cmo14g01615 | Cmo-Chr14:12822819 | Cmo17g00365 | Cmo-Chr17:2240071 | 3.84E-85 | wgd | |
| Cmo17g00365 | Cmo-Chr17:2240071 | Cmo05g01078 | Cmo-Chr5:8664597 | 5.26E-43 | wgd | |
| Cmo17g00365 | Cmo-Chr17:2240071 | Cmo08g01251 | Cmo-Chr8:7898614 | 6.34E-130 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo17g00365 | - | - | csv:101220618 | 316.62 |