Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00367 ATGGAGGAGGTGAAGAAGGAAGAAGAATTGAGAAAAGGCGATCAGAATTTGATGGGAAATTCCGGATTGTTATTCGACATCCCATTAATGGATTTATTGGCCGGACAAGATTTCACCCCTTCCTTGTTCGATCTCTTGTCGGCTGCGCCACCCACTACCACTCTTCCTCCGCCGTCCTCCGTCGTGCCGGAGTCATCCGAAGTTCTCAACACCCCTCCTACTCCCAACTCCTCCGTCTCTTGCTCCTCCAATGAAAAGGTTTTTGACGCCGACGACGGCGATCTCCGGGAGAAATCCCCTTTCAATAAGCAATTAAAAGCGAAAAAAAAGAATCAAAAAAGGGTAAGAGAGCCGAGATTTGCGTTCATGACTAAAAGCGAAGTGGATCATCTCGACGACGGCTATAGATGGCGGAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCTAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTTAAGAAACGTGTCGAACGTTCCTCCGATGACCCTTCTGTCGTCGTTACCACTTACGAAGGCCAACACATCCATCAAAGCCCAATCATGCCACGTGGAGCTTTATCAGTCGCCGCCGCCGCCGCCGCCTTCGCCTCACCGCAACCGTCTCTTGTTTTCCCACAGCCGCAATATACGTACACTCCGGCGCCGCCAGTGGATGTTCGATTTGATGCGGCGTTTCATAGTTTTGGAGAAGAACGACGTCGTATTGAGGGATCCTTCCAAGACCATGGCCTTCTGCAAGATATGATCGTACCGTCCTCCGCCTTACACATCCCGGAAGAAGAATAG 822 50.73 MEEVKKEEELRKGDQNLMGNSGLLFDIPLMDLLAGQDFTPSLFDLLSAAPPTTTLPPPSSVVPESSEVLNTPPTPNSSVSCSSNEKVFDADDGDLREKSPFNKQLKAKKKNQKRVREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHIHQSPIMPRGALSVAAAAAAFASPQPSLVFPQPQYTYTPAPPVDVRFDAAFHSFGEERRRIEGSFQDHGLLQDMIVPSSALHIPEEE 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2255107 2256077 + CmoCh17G003670.1 Cmo17g00367 400750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00367 273 SUPERFAMILY WRKY DNA-binding domain 123 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo17g00367 273 SMART WRKY_cls 131 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo17g00367 273 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 53 230 - -
Cmo17g00367 273 MobiDBLite consensus disorder prediction 53 99 - -
Cmo17g00367 273 Pfam WRKY DNA -binding domain 132 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo17g00367 273 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 230 IPR044810 GO:0003700
Cmo17g00367 273 Gene3D WRKY domain 118 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo17g00367 273 ProSiteProfiles WRKY domain profile. 126 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo17g00367 273 MobiDBLite consensus disorder prediction 59 85 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01612 Cmo17g00367 CCT
Cmo06g01565 Cmo17g00367 CCT
Cmo06g01565 Cmo17g00367 ECH
Cmo14g01612 Cmo17g00367 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01045 Cmo-Chr3:7804281 Cmo17g00367 Cmo-Chr17:2255107 2.48E-31 dispersed
Cmo05g00435 Cmo-Chr5:2035032 Cmo17g00367 Cmo-Chr17:2255107 6.37E-32 dispersed
Cmo05g00464 Cmo-Chr5:2164305 Cmo17g00367 Cmo-Chr17:2255107 8.21E-51 dispersed
Cmo11g02044 Cmo-Chr11:13877109 Cmo17g00367 Cmo-Chr17:2255107 1.23E-49 dispersed
Cmo12g00074 Cmo-Chr12:398380 Cmo17g00367 Cmo-Chr17:2255107 5.27E-54 dispersed
Cmo17g00367 Cmo-Chr17:2255107 Cmo19g01110 Cmo-Chr19:9444514 8.17E-49 dispersed
Cmo17g00998 Cmo-Chr17:8602598 Cmo17g00367 Cmo-Chr17:2255107 4.94E-28 dispersed
Cmo20g00284 Cmo-Chr20:1380500 Cmo17g00367 Cmo-Chr17:2255107 2.65E-36 dispersed
Cmo01g00287 Cmo-Chr1:1364234 Cmo17g00367 Cmo-Chr17:2255107 1.22E-55 wgd
Cmo14g00962 Cmo-Chr14:5136664 Cmo17g00367 Cmo-Chr17:2255107 1.80E-53 wgd
Cmo14g01612 Cmo-Chr14:12805350 Cmo17g00367 Cmo-Chr17:2255107 7.14E-75 wgd
Cmo17g00367 Cmo-Chr17:2255107 Cmo06g01565 Cmo-Chr6:11028323 1.32E-60 wgd
Cmo17g00367 Cmo-Chr17:2255107 Cmo08g01254 Cmo-Chr8:7916221 1.24E-71 wgd
Cmo17g00367 Cmo-Chr17:2255107 Cmo08g00472 Cmo-Chr8:2911698 1.70E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11378 PF03106 WRKY 2.50E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00367 - - csv:101205991 325.865