Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00369 ATGACTGGCGGCACGGAGGATGCCACATTAACAGTCCAGTCAACCTCGGTCCCTCTACTTCCTACAGGACTGCGCAAATTTGGGCTTCGATTTCTCAGTTCCGCAAAGCTGGATAGGCATAGAGAAGACCGCTATGGTTCCGACCAAGATTCCCACCCGTACCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCGATGAACCATCAAGACAGTCGCTGGAGCCCCAATAACTTCCGTGGCGGCGTTTCCGGAGGTAACCGTCGGCCTTTCGACAGCCCGCCGCGCTTCTCTACTCCCGGTGCTGCTAATTTTCGCCCTATGGGAACTGGCGGGGGGTTCCGTCCAATTCCTGGTACTGGCGGTGGTTTTGGGTCCAGTTTCCAGCCGCCTCCTGTTGCAGGACAGAAACGGGGCTATCCTTTCGCCGGCCGTGGAAGTTCTCCAGATCATTCGGACAGAAGCAGTTTTGCCAAGCTGTTTGTTGGATCCGTTCCAAGGACAGTTACAGAAGAAGATATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACAACCCCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCAGGCCCAATTCAAGTTCGATATGCTGATGGAGAGCAGGAGCGTCTCGGTGCAGTTGAGTTCAAATTGTTTGTTGGTTCACTAAATAAACAAGCCTCAGAAAAAGAAGTCAAGGAAATCTTTTCTCCATATGGAGTAGTTGACGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACAAAGGGATATGGCACTGGCGGCTATAAATGCACTTAATGGAAGGTTTACAATGGGAGGTTGTGATCAACCATTAAGCGTTCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCGGGTTTTGGTTCTCGCTTTCAAGCACCTGGTCCGAGACCAATGCCTAATTTTGGTGAATTTATGGGTGATCGAGTTCCAATCGATGTACGAGGTTTCAGGCCACCTGTTGATGCTGGTGCTTTTCCCTTTGGGGGGGGTCAGTTGCCTCCTAGGTCCAGTGAAATGGGACTGCCTTTGAACTTGGGTGGTCCTGGAAGTGGGTTTAGAGGTCCCAATCCTGGGTTAGCCTCTCCAGCATCCTCTGCTTCTCAACAGTCTGCCAGCCAGCATCCATCACTTGGCCTCCAAGCGTCGCCCGTGCTAAAGGCCGTTCAGTCAACAACACAGTTGCCACCGTCAAGTCAATTGCATCCTCATGGTCCTTCCTATTCTCAGCCACATTCAACTGCAGCATTAGCACAACAGCATAATCAACCACAAAATTTCAACTCTTCTGGTCAACTGCCGTTCAGTCAGCCCGCACCTTCCCAAGAGTTACCTAGCATTGGTGCACAGTTTCCGGTATCTCAGGCTATGGTCCAGCCGGGTGCCTCATCAGCTGCAGCTACACAAACTCCTTTGAGTATGAACTTACAATCCCATGCTGCTGCCCCTAATCAACAGCAACGTCCTACACCGATTCAGCCACGGCAGAATTCACCTTCTCAGTTAGCACACATGTTGTCACAACAAAAACAAACTCTCCATGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGTCGATACAACCATCAAATCAAAGCTCAACGTTGCAGCCGAGTTCCCGGACTATTAATCAGCAGTCTCACTGGACAGGGGTTGTGCCACACACAGCTACCAGTGCCACTTCTGCAACATCAGATACACATAAATCTACGGTTCCTCCTGTAGCTATAAATACCAGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAATAGTGTTACTGGTGAGAGTAAGTGGGAGAGACCTCAAGAGCTTTCGGCGATCGAGCAACAACAAAAGCCACCAGTAATGCAGCCTCTTAACCAGTCACGTCCTCAACTACTACCTACCCAGCAACTCTCTCAAACTCCCCAAGCCCAGCTTCAAACTCGGTTCCAGACACCGACGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGCACTTATACAAAATTGCAGACAGCTAATAGCTCGGTAAATGATCCTACTCGCTTCCACCAGGGACTTCAAGCGAGTCATGAATGGGCATGGAAGAATAAATAA 2319 49.33 MTGGTEDATLTVQSTSVPLLPTGLRKFGLRFLSSAKLDRHREDRYGSDQDSHPYRHSAAPSRFSDSPMNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTPEEADRAIRNLHNQHTLPGGAGPIQVRYADGEQERLGAVEFKLFVGSLNKQASEKEVKEIFSPYGVVDDVYLMRDEMKQSRGCGFVKYSQRDMALAAINALNGRFTMGGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDRVPIDVRGFRPPVDAGAFPFGGGQLPPRSSEMGLPLNLGGPGSGFRGPNPGLASPASSASQQSASQHPSLGLQASPVLKAVQSTTQLPPSSQLHPHGPSYSQPHSTAALAQQHNQPQNFNSSGQLPFSQPAPSQELPSIGAQFPVSQAMVQPGASSAAATQTPLSMNLQSHAAAPNQQQRPTPIQPRQNSPSQLAHMLSQQKQTLHASFQSSQQAFSQLQQQLQSIQPSNQSSTLQPSSRTINQQSHWTGVVPHTATSATSATSDTHKSTVPPVAINTSNWTEHTSPDGYKYYYNSVTGESKWERPQELSAIEQQQKPPVMQPLNQSRPQLLPTQQLSQTPQAQLQTRFQTPTPHPQPLQQPSFHSQEGTYTKLQTANSSVNDPTRFHQGLQASHEWAWKNK 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2261116 2272213 - CmoCh17G003690.1 Cmo17g00369 400752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00369 772 MobiDBLite consensus disorder prediction 385 440 - -
Cmo17g00369 772 CDD WW 649 678 IPR001202 GO:0005515
Cmo17g00369 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 330 IPR000504 GO:0003723
Cmo17g00369 772 Gene3D - 247 337 IPR012677 -
Cmo17g00369 772 MobiDBLite consensus disorder prediction 329 360 - -
Cmo17g00369 772 Gene3D - 146 246 IPR012677 -
Cmo17g00369 772 SMART ww_5 646 678 IPR001202 GO:0005515
Cmo17g00369 772 MobiDBLite consensus disorder prediction 705 739 - -
Cmo17g00369 772 SUPERFAMILY WW domain 650 682 IPR036020 GO:0005515
Cmo17g00369 772 MobiDBLite consensus disorder prediction 62 83 - -
Cmo17g00369 772 MobiDBLite consensus disorder prediction 590 614 - -
Cmo17g00369 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 240 IPR000504 GO:0003723
Cmo17g00369 772 PANTHER RNA BINDING PROTEIN 104 716 - -
Cmo17g00369 772 SUPERFAMILY RNA-binding domain, RBD 142 244 IPR035979 GO:0003676
Cmo17g00369 772 Pfam WW domain 649 676 IPR001202 GO:0005515
Cmo17g00369 772 Gene3D - 630 697 - -
Cmo17g00369 772 SMART rrm1_1 251 326 IPR000504 GO:0003723
Cmo17g00369 772 SMART rrm1_1 160 236 IPR000504 GO:0003723
Cmo17g00369 772 MobiDBLite consensus disorder prediction 453 508 - -
Cmo17g00369 772 MobiDBLite consensus disorder prediction 539 573 - -
Cmo17g00369 772 ProSiteProfiles WW/rsp5/WWP domain profile. 649 678 IPR001202 GO:0005515
Cmo17g00369 772 MobiDBLite consensus disorder prediction 423 440 - -
Cmo17g00369 772 CDD RRM2_FCA 251 330 IPR034645 -
Cmo17g00369 772 SUPERFAMILY RNA-binding domain, RBD 250 355 IPR035979 GO:0003676
Cmo17g00369 772 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 104 716 - -
Cmo17g00369 772 MobiDBLite consensus disorder prediction 42 103 - -
Cmo17g00369 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Cmo17g00369 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 317 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00369 - - - cmos:111460217 1310.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01252 Cmo-Chr8:7901232 Cmo17g00369 Cmo-Chr17:2261116 0 dispersed
Cmo17g00369 Cmo-Chr17:2261116 Cmo17g01110 Cmo-Chr17:9108630 1.30E-49 dispersed
Cmo01g00286 Cmo-Chr1:1355691 Cmo17g00369 Cmo-Chr17:2261116 1.35E-10 wgd
Cmo14g00964 Cmo-Chr14:5141875 Cmo17g00369 Cmo-Chr17:2261116 9.94E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00369 Cmo_Chr17 FPKM 39.710873 42.111572 14.987881 15.715723 14.80162 14.622436 14.973538 15.454143 14.565249 15.220114