Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00370 ATGGCTTTACTAGGCCCTGTGACTCACGCTCAGGTTTCGTTTCTTATCGGATTTTTAACCATTGTCGTTGCTTGGATTTATTCGGAGTACTTAGCATTTAAAAAGAAGTCGATCGCTTCCAAAGTAAGGCAAAGTGATGTTGGGTTTGCTGAGGTAGAAAGTGATGCTGGAAAGGAAGATGATAAAGCTGTTTTATTAGAAGGGGGGGCTATCAAGTCCATTCCTTCTGGAGCTCGAATTCCACCTACCTTCTCTACTGTTATCAGGTTCATTACGCTGGAAGAGTCATTCTTGATAGAAAATCGAATGTTACTCCGAGCAGCATCTGAACTTGGTCTTCTTTTAGCATACTTCTACATCTGTGACCGTACTGATACATTTGGATCGGCAACAAAGAGTTACAATCGAGATCTTTTCGCCTTCCTCTTGATCCTTCTTATCTTAGTTGCAGCAATTACTTCGTTCAAGATACATCTCGATAAATCACCATTTTCAGTGAAACCTATACTCTTCTTGAATAGGCATCAAACTGAGGAGTGGAAAGGATGGATGCAGGTGATTTTTTTGATGTACCATTACTTTGCTGCAAGAGAAATTTACAATGTGGGTCGTGTATGTGTTGCTGCATATGTGTGGATGACTGGATTCGGGAATTTTTCATATTACTATGCTCGTAAAGACTTTAGCCTTCCTAGATTTGCTCAGGCATGCTCTTCTATTGATCCTTCAATTTCTTGCTCTTACATGCTATACTATATCTGCCCCTTGCACACTTTTTTCTCTCTCGTGGTATATGGTATTGTTGGTGTTTTGCACAAGTACAATGAGATTAGAGCCGTCATTATCGTGAAATTTTTCGTTTGCTTCTTGGTCGTTATCATAGTGTGGGAAATACCTGGAGTGTTTGAAGTGCTTTGGGAACCATTTACCTTCATTCTAGGATATAAAGATCCAAATCGACTGAAAGAACAGTTGCCTCCTATGTATGAGTGGCACTTCCGCACAGGACTTGATCGCTATATTTGGATATTAGGCATGTTGTATGCTTACTATTATTCAACTATTGAGAAATGGATTGAAAAGCTAGACGAAGCAAAACTGAAGCGCAGGATACTGATCAAAACGACAATTGTTGTGACATCCGCAACGGCCGCATATCTATGGTTTGAGTACATATTCAAATTGGACAGTCTTACTTACAACCAATACCATCCTTACACTTCTTGGATTCCCATCACAGCCTACATATGCATACGAAATGTCAGCCAGAGTACCCGTAGCTATACTTTGACCATTTTCGGTTGGATAGGAAAGATTTCACTGGACACATACATCTCGCAGTTCCATATTTGGTTAAGATCAAATGCTCCGGACGCCCAGCCAAAGCTGTTGCTCATTATCATCCCAGATTATCCTTTACTGAACTTCATGCTTACAACTATCATACTTCTGACGACTTCTTACAGGCTCTCTGAGCTGACAAATACGTTTAAAACGGCCTTTGTACCTAGCAAGGACAATAAGCGCATTATGTATAACATGATTGCTGCAGCTGCAATCATGGCCATCTTATACGCCTTGTCATTCGTATTCCTTGAAGTCCCTCCAATGATGGTTTGA 1620 40.56 MALLGPVTHAQVSFLIGFLTIVVAWIYSEYLAFKKKSIASKVRQSDVGFAEVESDAGKEDDKAVLLEGGAIKSIPSGARIPPTFSTVIRFITLEESFLIENRMLLRAASELGLLLAYFYICDRTDTFGSATKSYNRDLFAFLLILLILVAAITSFKIHLDKSPFSVKPILFLNRHQTEEWKGWMQVIFLMYHYFAAREIYNVGRVCVAAYVWMTGFGNFSYYYARKDFSLPRFAQACSSIDPSISCSYMLYYICPLHTFFSLVVYGIVGVLHKYNEIRAVIIVKFFVCFLVVIIVWEIPGVFEVLWEPFTFILGYKDPNRLKEQLPPMYEWHFRTGLDRYIWILGMLYAYYYSTIEKWIEKLDEAKLKRRILIKTTIVVTSATAAYLWFEYIFKLDSLTYNQYHPYTSWIPITAYICIRNVSQSTRSYTLTIFGWIGKISLDTYISQFHIWLRSNAPDAQPKLLLIIIPDYPLLNFMLTTIILLTTSYRLSELTNTFKTAFVPSKDNKRIMYNMIAAAAIMAILYALSFVFLEVPPMMV 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2272598 2277931 + CmoCh17G003700.1 Cmo17g00370 400753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00370 539 Pfam 10 TM Acyl Transferase domain found in Cas1p 101 509 IPR012419 -
Cmo17g00370 539 PANTHER N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE 8 536 - -
Cmo17g00370 539 PANTHER PROTEIN REDUCED WALL ACETYLATION 2 8 536 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00370 K03377 CASD1; N-acetylneuraminate 9-O-acetyltransferase [EC:2.3.1.45] - csv:101212512 849.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01256 Cmo17g00370 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00569 Cmo-Chr13:6454373 Cmo17g00370 Cmo-Chr17:2272598 0 dispersed
Cmo17g00370 Cmo-Chr17:2272598 Cmo18g00445 Cmo-Chr18:2928183 0 dispersed
Cmo17g00370 Cmo-Chr17:2272598 Cmo08g01256 Cmo-Chr8:7919942 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g38 . . Bda03g01192 . Bpe04g01124 . Bma04g01116 . Cmo08g01256 Cmo17g00370 . . . . . . . . . . . . . . . . . . . . . . Cone5ag1607 Cone6ag0907 Cone9ag0913 . Csa06g01858 . . . . . . . . . . Sed09g0580 . . Cma08g01291 Cma17g00381 Car08g01157 Car17g00352 . Cpe17g00079 Bhi12g01944 Tan06g2781 Cmetu04g2722 Lac11g0982 Hepe03g0034 . Lcy12g0867 . . . . . . . . . . Cme11g02093
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000500 4 6 3 2 3 3 4 3 4 2 2 4 5 4 4 5 4 4 5 4 4 3 3 3 3 4 3 7 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00370 Cmo_Chr17 FPKM 33.377804 34.584866 46.299801 48.942036 46.217518 55.089718 46.83535 84.985947 87.625259 81.514252