Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00376 ATGAACAACGCCTGTTTTGTGGCTCCTACAGAAGACAGCCATCGAGCCACGCTAACTCTTCCTCTGCTCCGATTTTCCATTTCTAGGGTTCTACGTCTACCTCAATTTCTCAAATTCAATCTTCATCGCAATCGTTTCTCACTGAATTCGCCTCCCCACTGCTGCTCTGCTAGGTCTGAATTAGTTGGATTCCTGACTCGGCAGATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGCCGCAGTTCCAAGGAAAGAGATAGGCAGAAGCTTCTCGAGCAGACTAGATTGGAGCGAAACCGCCGATTGTCGTTGAGGCAGCAAAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGTCTCTGAAGCTGCATGTTGTAGGATGCGAGAGCAATTTCATGATACTTATGGAAAGCATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATAATGCAAAACACACCGGTGATTTTTCGGTTCTTGTAGAGGCTTGTCGGTTACTTCAGCAATTTGTTCGAGACAATGGGGACGTATTGAGCATCTTTGCTGGCAAGGATTATTTATCCAACAAGGCCTTAGTGGATTACAGAGTTAAGAAATTTGCATACGCTTGCATCCAGACAGTATATCATAATAGAAACCAATTGAGGAATCAACTTTTTGCTGCACCCGAGAACTCTAGCACACCTGCGACTCTATTGTTAGATGCAATTGTTTTCTTATTACAACCCGAACTCCCATGGGTTTGTAAGATTGTTGGCTACTTTCTGGAAAGAAATGCATATGTGCTGATTAGGGATATCACTTTGGCGGGGAAGGAAACTGAAGATTCGCATCCCGGCAGTTCAGTGTCTTCTTTAGAACGTCTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCATGCTGTTGCCCACGTGTTGATCCCAATTGGAGCTTCTCCTCCCAAATTCTTACTCTTCCTTTACTGTGGCAGACATTCCCTTACTTAAAGGAGGTTTTCGCTAGACGGGGGTTGATTGGACATTACATTCATCAGATGGCATCATGTGTTCAACATTACGCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGCTATGCATGCCTTCTTGGAAATGTATTAGAAATTTCCAGAACTGCTCTATCTCAGCCTGACTGCTCATCCGAATTGGCAGTAGATCTTGCTTCCATCACAACATTCTTGTTGGAACTACTTCCTTCGATGAAATCACCTCTTAGAGATATGGAAGAGAGTGCTGCATTGGGTGACGACGATGTGGTCGTGTCTGATCAAGAAATAGAGCTACCACTAAATAAAAATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGGCAGATTTCCCAAGTTAGTGGGCCTTATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCATGTGCTTTTCTGCATGTCACTTTCAATACACTACCTCTGGAACAAATTATGACCGTTCTAGCATACAGAACAGAGTTAGTTCCAGTACTTTGGAATTTTATAAAAAAGTGCCATGAGAACCAAAAATGGTCGTCCTTTTCGGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCTGTGTACAAGCACATGTTGACAATAATTGACAATGAGGAGTTTTATGAGCAGGAGAAGCCACTATCATTAAAGGATATCAGATGTCTAATTATTATTTTGAGACAGGCCCTATGGCAGCTTTTATGGGTGAGTCCTACAGCTCCTAGTAATTCTGCAAAACCTGCCGCTACTGCCCATGTTACTAAGAGGCACACCGTTGAATTCATTCAATACAGGGTTACAATTGTTGCCTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGGCAATTTACACCCCCCAGTGACTTCCATGCTGATGCCGTGAATGATTATTTCATTTCTCAGGCCGTGATAGAAAATACCAGAGCACATGATATACTTAAGCAAGCTCCCTTTTTAGTACCGTTTACAAGCAGGGTTAAGATTTTCACTTCACAACTAACAGCAGCTAGGCAAAGGAATGGATCTCATGCGGTGTTTGCTAGAAACCGGTTTAGAATTCGACGAGATCATATATTGGAGGATGCTTTTAGTCAGATGAGTGCATTGTCTGAAGATGATCTTCGAGGATCGATACGTGTGTCATTTGTTAATGAATTTGGAGTTGAGGAGGCTGGAATTGATGGTGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCACTTGCTCTACCCCAATCCTGGTTCAGGAATGATACATGAGCAACATCTCCAATTTTTTCATTTCCTTGGAGTTCTTTTGGCTAAGGCAATGTTTGAAGGAATTCTTGTTGATATTCCTTTTGCAACATTCTTCTTGAGCAAGCTTAAACAGAAGTACAACTATCTGAATGACTTGCCATCCTTGGACCCTGAATTGTATCGCCACCTTATTTTCTTAAAGCATTTTGAAGGGGACATTTCTGAACTGGAGCTATATTTTGTTATTATAAACAATGAATATGGAGAGCAAACAGAAGAAGAGCTACTCCCTGGAGGAAAAAACCGTCGTGTCACAAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTAAACTTTCAGATAAGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAACTTATACAGAAAGAATGGATCGATATGTTCAATGAACATGAATTCCAGCTTTTGATATCAGGTTCACTGGACGGCTTGGATGTGGATGACCTACGGACACATACTACTTATTCAAGTGGCTATCATAAAGAACATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGTAAACCAAAAGAAATTTCTGAAGTTTGTGACTGGTTGCTCTCGAGGACCACTTCTTGGCTTTAGATATCTTGAGCCATGTTTTTGCATACAAAGGGCTGCTGGTAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCAGCGACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGCAAGGAGCAACTGGCAAACAAATTGATGTATGCCATAAATGCAGATGCCGGTTTTGATCTAAGCTAA 3306 41.71 MNNACFVAPTEDSHRATLTLPLLRFSISRVLRLPQFLKFNLHRNRFSLNSPPHCCSARSELVGFLTRQMFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKVSEAACCRMREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRLLQQFVRDNGDVLSIFAGKDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENSSTPATLLLDAIVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGKETEDSHPGSSVSSLERLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARRGLIGHYIHQMASCVQHYANVLPKDVTADIPGYACLLGNVLEISRTALSQPDCSSELAVDLASITTFLLELLPSMKSPLRDMEESAALGDDDVVVSDQEIELPLNKNVEKQICDAIDPRFLLQLANALFGQISQVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWNFIKKCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIIILRQALWQLLWVSPTAPSNSAKPAATAHVTKRHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRAHDILKQAPFLVPFTSRVKIFTSQLTAARQRNGSHAVFARNRFRIRRDHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHFEGDISELELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDGLDVDDLRTHTTYSSGYHKEHYVIEMFWEVIKSFSVVNQKKFLKFVTGCSRGPLLGFRYLEPCFCIQRAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLMYAINADAGFDLS 1101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2314870 2329638 + CmoCh17G003760.1 Cmo17g00376 400759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00376 1101 SMART hect_3 758 1101 IPR000569 GO:0004842
Cmo17g00376 1101 ProSiteProfiles HECT domain profile. 760 1101 IPR000569 GO:0004842
Cmo17g00376 1101 Gene3D Hect, E3 ligase catalytic domain 865 944 - -
Cmo17g00376 1101 Pfam HECT-domain (ubiquitin-transferase) 796 1101 IPR000569 GO:0004842
Cmo17g00376 1101 SUPERFAMILY Hect, E3 ligase catalytic domain 735 1093 IPR035983 GO:0004842
Cmo17g00376 1101 Gene3D Hect, E3 ligase catalytic domain 983 1100 - -
Cmo17g00376 1101 Gene3D Hect, E3 ligase catalytic domains 741 979 - -
Cmo17g00376 1101 PANTHER BNAC01G43970D PROTEIN 69 1101 - -
Cmo17g00376 1101 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 69 1101 IPR044611 GO:0000209|GO:0061630
Cmo17g00376 1101 CDD HECTc 739 1099 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00376 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - csv:101218340 1962.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00426 Cmo-Chr6:2040599 Cmo17g00376 Cmo-Chr17:2314870 5.13E-104 dispersed
Cmo17g00376 Cmo-Chr17:2314870 Cmo20g00750 Cmo-Chr20:3750324 2.98E-30 dispersed
Cmo17g00376 Cmo-Chr17:2314870 Cmo16g00998 Cmo-Chr16:6871815 9.25E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00376 Cmo_Chr17 FPKM 66.146141 76.972786 103.27169 114.727882 20.530415 14.556113 16.687178 78.14901 73.413803 75.544388