Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00383 ATGGAAGTTGCTAAAATCGCTCAAATTCTATCCGAGACGCTTAGCAATGACCCGCAAGTCATCCATGGAGCCACCGAGTCTCTCGATCGCCTATCTTCTCATCCTGAGCTTCCGTCTGCTCTACTTTGTATTGCTAATGGTTTAGCTGTTCATCCCTTCCATGTAGGAAGTCACGATCAAGGTCAAAAGATAGCTGCTGCTGCTTACCTTAAAAATTTGAGTAGGAGAAATACTGAGGGCGAATTTCCATGTTCAAAAGTCAGCAAGGGGTTCAAGGATGAACTGCTGAGAGCGTTGTTCCAAGCGGAACCAAAAGTTCTAAAAGTTTTGGTTGAAGTGTTTCACAGCATAGTGGTCAATGAGTTTGTGAAGCAGAGCTCATGGCCTGAACTTGTGTCTGATCTTTGCTCTGCTATTCAAAACAGCAATCTTTTCAACAACGGAGCCAAATGTCAATGGAATGCTATCAACACCCTGTCTGTTCTCTGTACAACGTGCAGACCTTTCCAGTACTTTTTGAATCCTAAAGATTCTAATGAGCCCGTACCACCACAGTTAGAGCTACTTGCAAACACGATTATTGTTCCCCTGCTAGCTGTATTTCATCGTCTTGTTGAACAGGCTCTTTCTAATCATGATGGAAGGGAAGTTGAGATAGATAAGATTCTTTCAATACTATGCAAATGTGTCTACTTTTCTGTGAGATCGCATATGCCTTCTTCTTTGGTGCCTCTACTTCCATCATTTTGCCATGATTTAATTAGCATTCTAGATTCCATAAAATTTGAGGCTGCAGTTTCCCCAGAGTATGGCAATGTGAGCAGGTTGAAAACTGCGAAGAGAAGCTTGCTTATTTTCTGCGTCTTTGTTACCCGACACCGAAAGCATACTGATAAGTTGATGTCACACATCATAAAATGTGTCTTGAACATTGTGAATTATAGCAAAAATGCTCATAAGCTCGACTTTTTATCAGAGAGGATTATTTCGCTAGGCTTTGATGTGATTTCACATGTTCTGGAGACGGGGCGAGGATGGAGGCTGGTTTCTCCGCACTTTTCAACATTGATACACTCTGGAATATTTCCATCCCTTATAATGAACGAGAAGGACGTTTCTGAGTGGGAAGATGATCCAGATGAGTACTTAAGGAAGAATCTTCCATCTGACCTAGAAGAAGTTTCTGGTTGGAGGGAGGATTTATACACAGCCAGGAAAAGTGCAATAAACTTGCTCGGCGTTATTGCATTGTCGAAGGGTCCTCCCACAGTGACCCATATGAATGGTTCTTCAGCTTCATCAAAGCGTAAAAAAGGCAGCAAGAGAACAAATAATCAATGCGCTACTATGGGAGAGTTGGTTGTACTTCCATTTCTTTCGAAATATCCTATTCCCTCTGATGCAAACGCTTCCCAAACCAGTATTGTAAATAGTTACTATGGTGTTCTAATTGCGTATGGTGGCTTGCTTGATTTTCTAAGGGAGCAACAACCTGGATACGTGACGTTTCTAATCCGCACAAGAGTGTTGCCTCTATATGCTGTGTCAACGTGCCTGCCATATTTAGTTGCCTCTGCAAATTGGGTACTTGGAGAGCTTGCATCCTGCCTGCCTGAAGAGGTCTGTGCTGAAATATATTCTTCATTGGTTAAGGCATTATCCATGCCTGATAAGGAGGAAGTTTCATTTTACCCTGTCCGAGTTTCTGCTGCTGGAGCAATAGCCAAGCTTCTTGAAAATGACTACTTGCCACCTGAGTGGTTACCTCTTCTTCAAGTTGTAATAGGTGGGATTGGCCAAGATGATGAAGAGAACTCCATTTTGTTTCAGCTTCTCAGTTCCATTGTGGAAGCTGGTAATGAAAACGTCGCCATCCATATTCCTCACGCTGTTTTGTCTCTGGTTGGTGCAATCTCAAAAAGCATACCTCCTAATTTGGAGCCATGGCCTCAAGTTGTTGAACGTGGGTTTGCAGCTTTATCAGTGATGGCTCAGTCTTGGGAAAACTTCATACTTGAGAAAACTGAGCAAGATGCATCGTGTGAACGGTCAACATCGGAGCAAGCCACAATCAGTAGATCATTCTCGTCTCTCTTGCAGCAGGCGTGGCTTGCACCCATGTACTCATTGGTTAAACTAATTCGAGTTGGAATGTTATTCAGTAGGAGTTATCTAGAATTCAAATCATTGTCCCAGGAAATGGATGAAGATCAGGAATTGTTGCCCCCTCCATCATGCATAGATCATTCATCAAGGTTGCTTCAGTTCATCATGGTGTCTGTTACAGGGAGCAATACTATTTCAGAGCTTAAAGTATCTGAATTAGTATCAGTCTGGGCTGATCTTATTGCAGACTGGCATTCTTGGGAAGAATCAGAGGATTTCTCAGTCTTTAATTGTATTATGGAAGTTGTTAGATTAAATAACAAATATGCACTGAAGAACTTTTTTGGGAAGCCAACACCATCTCCTCCAGCTCCGCCAGTGCCTCGACGGTCTATTGTAGAAAACATTGGAGCTTTCATTAATCAGACAATCTCACAATATCCATCTGCTACATGGAAAGCTTGTTCGTGTATTCATATGTTATTGAATGTTCCTAGTTACTCGTTTGAAGCGGAAGGCGTTAAGGAGTCGCTGGTAGTCACGTTTAGTCGGACGTCATTTTCCCGTTTTAGAGAAATCCAAAGCAAACCAAGTGCATTGTGGAAGCCTTTACTGCTTTCCATATCAACATGCTATATCTGTCTTCCTGACACTGTAGAGAGACTTTTGGAGAAGTTTGATGGAGGAGGCTTCACAGTCTGGGTCTCAGCCCTTGGTTATATCTGTAGCAGCTCTTTTGCGCCCGGTTTGTCTGCGGAATCGGAGATAAAGTTGATTGGTCAGTGGCTTTTCCTATCTCGACTGGTTCTTGAATCAAAGTTGATTTTACTGTTGTTGACATTGGTCAAGGTGGTGGAACGAATAATGGAGTTAGGAAAGCCAAGAGATGATTTCCTATGGAAGTCCTTCAGTTCATTGATGGAGGCTTCTATACGGCTGAAAGAAGTGCGAGAAGAAAAGGACGAAGAATCTGATGAAAATGAAGAGGAGGACGACAGTGATGAAATAGAAGATGATGAGGATTCTGATGCCGATGAACTTGAAGAAACTGAAGAACAATTTCTGGATAGGTATGCCAAAGCGGCTATTGATTTGGAAAACAATACTCTTATTGAAGAAGGGGATGTGGAAGATTACGACCAGGATATTGAATTGGGTTGTTATGAAGAGGTAGATGAGGGAAGGATCGTCTACTCTTTACTGGAGAAATATCACCCCATCCTGAGCCAGGGACAGGGATGGCCATCGGAGCTCCCAATGAGATTCTTGAATGCACATCCAGAATATACTACGTTTCTCCGACTATCTGGGTAA 3420 42.51 MEVAKIAQILSETLSNDPQVIHGATESLDRLSSHPELPSALLCIANGLAVHPFHVGSHDQGQKIAAAAYLKNLSRRNTEGEFPCSKVSKGFKDELLRALFQAEPKVLKVLVEVFHSIVVNEFVKQSSWPELVSDLCSAIQNSNLFNNGAKCQWNAINTLSVLCTTCRPFQYFLNPKDSNEPVPPQLELLANTIIVPLLAVFHRLVEQALSNHDGREVEIDKILSILCKCVYFSVRSHMPSSLVPLLPSFCHDLISILDSIKFEAAVSPEYGNVSRLKTAKRSLLIFCVFVTRHRKHTDKLMSHIIKCVLNIVNYSKNAHKLDFLSERIISLGFDVISHVLETGRGWRLVSPHFSTLIHSGIFPSLIMNEKDVSEWEDDPDEYLRKNLPSDLEEVSGWREDLYTARKSAINLLGVIALSKGPPTVTHMNGSSASSKRKKGSKRTNNQCATMGELVVLPFLSKYPIPSDANASQTSIVNSYYGVLIAYGGLLDFLREQQPGYVTFLIRTRVLPLYAVSTCLPYLVASANWVLGELASCLPEEVCAEIYSSLVKALSMPDKEEVSFYPVRVSAAGAIAKLLENDYLPPEWLPLLQVVIGGIGQDDEENSILFQLLSSIVEAGNENVAIHIPHAVLSLVGAISKSIPPNLEPWPQVVERGFAALSVMAQSWENFILEKTEQDASCERSTSEQATISRSFSSLLQQAWLAPMYSLVKLIRVGMLFSRSYLEFKSLSQEMDEDQELLPPPSCIDHSSRLLQFIMVSVTGSNTISELKVSELVSVWADLIADWHSWEESEDFSVFNCIMEVVRLNNKYALKNFFGKPTPSPPAPPVPRRSIVENIGAFINQTISQYPSATWKACSCIHMLLNVPSYSFEAEGVKESLVVTFSRTSFSRFREIQSKPSALWKPLLLSISTCYICLPDTVERLLEKFDGGGFTVWVSALGYICSSSFAPGLSAESEIKLIGQWLFLSRLVLESKLILLLLTLVKVVERIMELGKPRDDFLWKSFSSLMEASIRLKEVREEKDEESDENEEEDDSDEIEDDEDSDADELEETEEQFLDRYAKAAIDLENNTLIEEGDVEDYDQDIELGCYEEVDEGRIVYSLLEKYHPILSQGQGWPSELPMRFLNAHPEYTTFLRLSG 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2368870 2383591 - CmoCh17G003830.1 Cmo17g00383 400766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00383 1139 Coils Coil 1008 1055 - -
Cmo17g00383 1139 Pfam Cse1 190 412 IPR013713 GO:0006886
Cmo17g00383 1139 MobiDBLite consensus disorder prediction 1017 1052 - -
Cmo17g00383 1139 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 1136 - -
Cmo17g00383 1139 Gene3D - 1 809 IPR011989 -
Cmo17g00383 1139 PANTHER IMPORTIN-7, 8, 11 3 1136 - -
Cmo17g00383 1139 MobiDBLite consensus disorder prediction 1023 1052 - -
Cmo17g00383 1139 SUPERFAMILY ARM repeat 3 1052 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00383 - - - cpep:111807225 2027.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00383 Cmo-Chr17:2368870 Cmo17g00555 Cmo-Chr17:5691676 6.36E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . Sed09g0632 . . . Cma17g00394 . Car17g00365 Cpe12g00345 . Bhi12g01983 Tan06g2808 Cmetu11g2556 . . . Lcy12g0895 . . . . . . . Lsi09g01519 . . Cme11g02111
Vvi5g189 . . . . . . . . . Cmo17g00383 . . . . . . . . . . . . . . Cla06g00399 Cam06g0420 Cec06g0428 Cco06g0428 Clacu06g0407 Cmu06g0407 Cre06g1186 . . . . . . Chy11g01605 . . . . . . . . . . . . . Cma17g00394 . Car17g00365 . . . . . . . . . . . . . . . . Lsi09g01519 . . Cme11g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010694 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 5 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00383 Cmo_Chr17 FPKM 5.304965 5.555455 6.54726 6.373508 19.689518 22.534359 17.320597 10.745847 10.636158 11.041878