Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00387 | ATGGCGCCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTATTTACTGGAGTCCTGGTGGGGGTGTTTATTGTAATAGTCCTTGTGGTGCTATCAATATGTGTTACTTCAAGAAGAAAGTCTAGAAGGGTAAGTGGCATGCTTCCTCTCAGCCGTATTTCCATTGCATCAAAGGAAATAAAGGAGATTGGGGTGGATCATGTTTCAGCAATCCAGCAGGGCCCCCGCCCCCATGATGGAATTGAAACGGAATCAGAAAAGGTTCTGCTATATTCAAACAAGGCCTACGATTACAGCATATCAGGCTCAGATGATCACACAGAGATATATGCTATTGGTTCTGGAGAAGGAAGCAAGGAAGCAAGTGCTTTGCATAGACCCTCAGATTCAATACCACCGGACACTTCGCCACTGGCTGGTCTGCCGGATTTCTCGCAACTGGGATGGGGTCACTGGTTCACCTTAAGAGATCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTCTATCGAGGTCAACTTATCAATGGGACACCTGTGGCTGTCAAAAAGCTTCTAAATGTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCGTTTGGGCATGTGAGGCATAAGAACCTAGTTAGGCTGCTGGGATACTGCATTGAAGGAACACACAGGATATTAGTATATGAGTATGTGGACAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTTTAAGCCAGTATGGATATCTCACTTGGGAAGCCCGAATCAAAATTCTCCTTGGTACTGCTAAGGCGCTGGCATATTTGCACGAGGCAATTGAACCAAAAATTGTACATCGAGATATCAAGGCAAGCAACATATTGATCGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTAGCCAAATTACTCGGTGCTGGGAAGAGTCACATTACCACCAGAGTTATGGGAACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAACGAGAAAAGCGATGTTTATAGTTTTGGAGTGGTTCTTTTGGAAGCGATTACTGGAAGAGACCCTGTTGATTATGGCCGCCCAACACATGAGGTAAATTTGGTAGATTGGCTAAAGATGATGGTAGGAAGCAAACGATCAGAAGAGGTGGTAGACCCAAATATAGAGAGAAAGCCATCAGTTAGTGAACTAAAGCGAGCTCTTTTGACCGCTTTGAGGTGTGTGGATCCAGATTCTGATAAGAGGCCTAAGATGAGCCAAGTGGCCCGCATGCTCAACTCCGAGGAAAATCCAATTCCTCGACAGGACCGGAGACCCAGAAAGGGCCATGCTACTGCGACCAAAATGGAGTCTGGGAAACAGGAGAGAGGACCCAGAAGACACAAATAA | 1443 | 45.05 | MAPDLNTTLSKKTFVFGMKVWVFTGVLVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLSRISIASKEIKEIGVDHVSAIQQGPRPHDGIETESEKVLLYSNKAYDYSISGSDDHTEIYAIGSGEGSKEASALHRPSDSIPPDTSPLAGLPDFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGQLINGTPVAVKKLLNVGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALSQYGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSVSELKRALLTALRCVDPDSDKRPKMSQVARMLNSEENPIPRQDRRPRKGHATATKMESGKQERGPRRHK | 480 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2404272 | 2407505 | - | CmoCh17G003870.1 | Cmo17g00387 | 400770 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00387 | 480 | SUPERFAMILY | Protein kinase-like (PK-like) | 157 | 452 | IPR011009 | - | |
Cmo17g00387 | 480 | MobiDBLite | consensus disorder prediction | 427 | 480 | - | - | |
Cmo17g00387 | 480 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 247 | - | - | |
Cmo17g00387 | 480 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 294 | 306 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo17g00387 | 480 | PANTHER | RECEPTOR-LIKE PROTEIN KINASE-RELATED | 2 | 473 | - | - | |
Cmo17g00387 | 480 | CDD | STKc_IRAK | 179 | 444 | - | - | |
Cmo17g00387 | 480 | SMART | serkin_6 | 173 | 443 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00387 | 480 | Pfam | Protein kinase domain | 174 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00387 | 480 | ProSitePatterns | Protein kinases ATP-binding region signature. | 179 | 202 | IPR017441 | GO:0005524 | |
Cmo17g00387 | 480 | MobiDBLite | consensus disorder prediction | 448 | 474 | - | - | |
Cmo17g00387 | 480 | ProSiteProfiles | Protein kinase domain profile. | 173 | 451 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00387 | 480 | Gene3D | Transferase(Phosphotransferase) domain 1 | 248 | 456 | - | - | |
Cmo17g00387 | 480 | PANTHER | OS01G0323000 PROTEIN | 2 | 473 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00038 | Cmo-Chr2:209735 | Cmo17g00387 | Cmo-Chr17:2404272 | 0 | dispersed | |
Cmo11g02045 | Cmo-Chr11:13879578 | Cmo17g00387 | Cmo-Chr17:2404272 | 0 | dispersed | |
Cmo17g00387 | Cmo-Chr17:2404272 | Cmo20g00285 | Cmo-Chr20:1382946 | 0 | dispersed | |
Cmo17g00387 | Cmo-Chr17:2404272 | Cmo05g01068 | Cmo-Chr5:8613152 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74998 | PF00069 | Pkinase | 2.90E-48 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00387 | - | - | csv:101204202 | 863.603 |