Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00387 ATGGCGCCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTATTTACTGGAGTCCTGGTGGGGGTGTTTATTGTAATAGTCCTTGTGGTGCTATCAATATGTGTTACTTCAAGAAGAAAGTCTAGAAGGGTAAGTGGCATGCTTCCTCTCAGCCGTATTTCCATTGCATCAAAGGAAATAAAGGAGATTGGGGTGGATCATGTTTCAGCAATCCAGCAGGGCCCCCGCCCCCATGATGGAATTGAAACGGAATCAGAAAAGGTTCTGCTATATTCAAACAAGGCCTACGATTACAGCATATCAGGCTCAGATGATCACACAGAGATATATGCTATTGGTTCTGGAGAAGGAAGCAAGGAAGCAAGTGCTTTGCATAGACCCTCAGATTCAATACCACCGGACACTTCGCCACTGGCTGGTCTGCCGGATTTCTCGCAACTGGGATGGGGTCACTGGTTCACCTTAAGAGATCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTCTATCGAGGTCAACTTATCAATGGGACACCTGTGGCTGTCAAAAAGCTTCTAAATGTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCGTTTGGGCATGTGAGGCATAAGAACCTAGTTAGGCTGCTGGGATACTGCATTGAAGGAACACACAGGATATTAGTATATGAGTATGTGGACAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTTTAAGCCAGTATGGATATCTCACTTGGGAAGCCCGAATCAAAATTCTCCTTGGTACTGCTAAGGCGCTGGCATATTTGCACGAGGCAATTGAACCAAAAATTGTACATCGAGATATCAAGGCAAGCAACATATTGATCGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTAGCCAAATTACTCGGTGCTGGGAAGAGTCACATTACCACCAGAGTTATGGGAACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAACGAGAAAAGCGATGTTTATAGTTTTGGAGTGGTTCTTTTGGAAGCGATTACTGGAAGAGACCCTGTTGATTATGGCCGCCCAACACATGAGGTAAATTTGGTAGATTGGCTAAAGATGATGGTAGGAAGCAAACGATCAGAAGAGGTGGTAGACCCAAATATAGAGAGAAAGCCATCAGTTAGTGAACTAAAGCGAGCTCTTTTGACCGCTTTGAGGTGTGTGGATCCAGATTCTGATAAGAGGCCTAAGATGAGCCAAGTGGCCCGCATGCTCAACTCCGAGGAAAATCCAATTCCTCGACAGGACCGGAGACCCAGAAAGGGCCATGCTACTGCGACCAAAATGGAGTCTGGGAAACAGGAGAGAGGACCCAGAAGACACAAATAA 1443 45.05 MAPDLNTTLSKKTFVFGMKVWVFTGVLVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLSRISIASKEIKEIGVDHVSAIQQGPRPHDGIETESEKVLLYSNKAYDYSISGSDDHTEIYAIGSGEGSKEASALHRPSDSIPPDTSPLAGLPDFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGQLINGTPVAVKKLLNVGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALSQYGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSVSELKRALLTALRCVDPDSDKRPKMSQVARMLNSEENPIPRQDRRPRKGHATATKMESGKQERGPRRHK 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2404272 2407505 - CmoCh17G003870.1 Cmo17g00387 400770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00387 480 SUPERFAMILY Protein kinase-like (PK-like) 157 452 IPR011009 -
Cmo17g00387 480 MobiDBLite consensus disorder prediction 427 480 - -
Cmo17g00387 480 Gene3D Phosphorylase Kinase; domain 1 155 247 - -
Cmo17g00387 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Cmo17g00387 480 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 473 - -
Cmo17g00387 480 CDD STKc_IRAK 179 444 - -
Cmo17g00387 480 SMART serkin_6 173 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00387 480 Pfam Protein kinase domain 174 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00387 480 ProSitePatterns Protein kinases ATP-binding region signature. 179 202 IPR017441 GO:0005524
Cmo17g00387 480 MobiDBLite consensus disorder prediction 448 474 - -
Cmo17g00387 480 ProSiteProfiles Protein kinase domain profile. 173 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00387 480 Gene3D Transferase(Phosphotransferase) domain 1 248 456 - -
Cmo17g00387 480 PANTHER OS01G0323000 PROTEIN 2 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00038 Cmo-Chr2:209735 Cmo17g00387 Cmo-Chr17:2404272 0 dispersed
Cmo11g02045 Cmo-Chr11:13879578 Cmo17g00387 Cmo-Chr17:2404272 0 dispersed
Cmo17g00387 Cmo-Chr17:2404272 Cmo20g00285 Cmo-Chr20:1382946 0 dispersed
Cmo17g00387 Cmo-Chr17:2404272 Cmo05g01068 Cmo-Chr5:8613152 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74998 PF00069 Pkinase 2.90E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00387 - - csv:101204202 863.603