Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00389 ATGGTGGGCGGCGGCGGCGAGGAAAATGAAGATCGGGCGGCGCGTGTGCGACTGGGGAAGTACGAGCTGGGGAAAACTCTGGGGCATGGGAACTTCGGAAAGGTCAAATTAGCTATCAATTTTGAAACGGATCAGCCTTTTGCTGTCAAGGTCCTCGACAAGACCAAGATCATCGACCTCAATATCTCCGATCAGTTTAAAAGGGAAATACGGACGCTGAAGCTTCTCAAGCATCCAAATATAGTGAGGCTACACGAGGTGTTGGCCAGTAAAAGCAAAATTTACATGGTTCTCGAGTATGTGAACGGGGGAGAATTGTTTAATAGAATCGCATCCAACGGGAAGCTGTCGGAAGATCGAGGTAGAAAAATCTTCCAACAGTTAATTGACGGTGTGAGTCACTGCCATTGGAAAGGCGTTTACCATAGGGATCTTAAGCTTGAGAACATATTGGTTGATGCGAAGGGAAATATTAAGATATCTGATTTTGGCTTAAGTGCATTACCCGAGCATTTAAGGAATGATGGCTTGCTTCACACCACGTGCGGAAGCCCAAACTACGTGGCACCTGAGATTCTAGCTAACCGAGGGTATGATGGTGCGGCCTCTGATGTTTGGTCTTGTGGGGTTATCTTATACGTAATTCTTACTGGATCGCTTCCTTTCGAAGATAGAAATTTGTGCGTCCTTTACAATAAGATCTTGAAGGGTGAAACGCAGCTACCCAAATGGCTATCACAAGGGGCTCAAAATTTGATCAAAAGGATTCTTGATCCTAACCCTATTTCTCGGATAACTATGGCAAGTATCAAAATGGACGAGTGGTTTAGAAAGGATTACAATCCAGCCTACCTTGACGATGACGAGGAGGATATAAACACTCAAAGTGAGGCCATCCCGACGCATCAAGAGCCATCTTATCTCGAGGAAAGGAGTCCGAGATCTCCCACGACTATAAACGCTTTTGAACTGATTGGAATGTCATCATGTCTAGATCTTTCAGGCTTATTTGAGAAAGAGGATATTTCTGAGAGGAAGATTAGATTTACAACCATTCACTCAGCCAAAGAAGACATCCTCAATCGGATGGAGGATCTTGTCAAAGAAATGGGGTTTCTTGTCCACAAGAAAGAAGGAAGGTTGAAAGTAATGAGAGAGCACAAGGGGCAGAATGGTGTGGCCATTATACTTTCAGTATCAGCAAAGGTTTTTGAGATAAGCCCTTCACTATATGTTATAGAATTAAGAAAGGTGCAAGGAGAATCATCTTCATATAGACAGCTATGTAAAATATTATCAAGTGATTTAGGCATCCCGTCGAGACAGGGCTCAGTGATGGCAAGTGGCTAA 1350 43.85 MVGGGGEENEDRAARVRLGKYELGKTLGHGNFGKVKLAINFETDQPFAVKVLDKTKIIDLNISDQFKREIRTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGGELFNRIASNGKLSEDRGRKIFQQLIDGVSHCHWKGVYHRDLKLENILVDAKGNIKISDFGLSALPEHLRNDGLLHTTCGSPNYVAPEILANRGYDGAASDVWSCGVILYVILTGSLPFEDRNLCVLYNKILKGETQLPKWLSQGAQNLIKRILDPNPISRITMASIKMDEWFRKDYNPAYLDDDEEDINTQSEAIPTHQEPSYLEERSPRSPTTINAFELIGMSSCLDLSGLFEKEDISERKIRFTTIHSAKEDILNRMEDLVKEMGFLVHKKEGRLKVMREHKGQNGVAIILSVSAKVFEISPSLYVIELRKVQGESSSYRQLCKILSSDLGIPSRQGSVMASG 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2420324 2427189 - CmoCh17G003890.1 Cmo17g00389 400772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00389 449 CDD CIPK_C 320 436 - -
Cmo17g00389 449 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Cmo17g00389 449 PANTHER SERINE/THREONINE KINASE 15 444 - -
Cmo17g00389 449 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00389 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Cmo17g00389 449 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00389 449 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cmo17g00389 449 Gene3D Kinase associated domain 1, KA1 320 438 - -
Cmo17g00389 449 SUPERFAMILY Protein kinase-like (PK-like) 17 319 IPR011009 -
Cmo17g00389 449 Gene3D Transferase(Phosphotransferase) domain 1 13 319 - -
Cmo17g00389 449 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00389 449 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 15 444 - -
Cmo17g00389 449 Pfam NAF domain 316 376 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00389 Cmo-Chr17:2420324 Cmo13g00546 Cmo-Chr13:6316667 2.46E-156 dispersed
Cmo14g01590 Cmo-Chr14:12623954 Cmo17g00389 Cmo-Chr17:2420324 0 wgd
Cmo17g00389 Cmo-Chr17:2420324 Cmo06g01587 Cmo-Chr6:11133172 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74999 PF00069 Pkinase 7.70E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00389 K07198 - csv:101206030 678.322