Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00404 ATGGATCGGCGGGATCCGTCGTTTTCTGGGTCACAATCTTTCTATATACAGAGGGGAATGAGTAACTCTGGCTCCGGAGGACAGGGGTTGCGTTCCTCTCCTAACCCAAATGTGGCATTTCAGACCAACACTGGTGGGAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCCTTTCACCTTATGGTGGCAATGTTGGGGCTCAATCTGGTGGAATGATGGGTAGCGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTTTCTCCTTCCCCTTCTGCTGTGAATCCAGCCATTGTAGGTTCTTCACCGAAGCGGGGAAGGGGTCGCCCGCCTGGCTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTGAAACACTTTTTGGGTCAGCTGGGATGGGTTTTACTCCACATGTTATCACCATTGGAGTAGGAGAAGATATTGCTGCCAAAATTACGTCGTTTTCGCAGCAGGGACCGAGAGTTGTCTGCATCTTGTCAGCAAATGGTGCTGTCTCTACTGTTACACTTCGTCAGCCTTCGAGTTCGGGAGGCACCGTCACATACGAGGGGCGTTTTGAGATAATATGTCTATCAGGCTCATATGCTCTTGGAGAAGCTGTTGGTTCTCGGAACCGCAGTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTCGTTGGTGGCGGAGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTAATCGTAGGGAGCTTCATGTGGGGTGGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATTGACTCGGATCAACAGGCAGTAGATCATGCAGTTGCTATAGCAAACGTGCAACAGAATCAGAATCTGACATCGACATCCTCGGTTAGTATGTGGCCGTCATCGCAGTCTTTGGACATGCGCAATGCCCATATCGACATCGATCTGATGCGCGGGTTAAGTGGGATTGAGTTTGGATTATAA 1026 51.27 MDRRDPSFSGSQSFYIQRGMSNSGSGGQGLRSSPNPNVAFQTNTGGNNVGSGLPMDPNPALSPYGGNVGAQSGGMMGSEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAIVGSSPKRGRGRPPGSGKKQQLASLGETLFGSAGMGFTPHVITIGVGEDIAAKITSFSQQGPRVVCILSANGAVSTVTLRQPSSSGGTVTYEGRFEIICLSGSYALGEAVGSRNRSGGLSVSLASPDGRVVGGGVGGALIAATPVQVIVGSFMWGGSKSKYKKREAIEGVIDSDQQAVDHAVAIANVQQNQNLTSTSSVSMWPSSQSLDMRNAHIDIDLMRGLSGIEFGL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2679899 2684227 - CmoCh17G004040.1 Cmo17g00404 400787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00404 341 CDD DUF296 149 263 IPR005175 -
Cmo17g00404 341 MobiDBLite consensus disorder prediction 97 111 - -
Cmo17g00404 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Cmo17g00404 341 MobiDBLite consensus disorder prediction 1 132 - -
Cmo17g00404 341 PRINTS AT-hook-like domain signature 82 92 IPR017956 GO:0003677
Cmo17g00404 341 PRINTS AT-hook-like domain signature 116 127 IPR017956 GO:0003677
Cmo17g00404 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 - -
Cmo17g00404 341 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Cmo17g00404 341 SMART AT_hook_2 118 130 IPR017956 GO:0003677
Cmo17g00404 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 IPR039605 GO:0003680
Cmo17g00404 341 Gene3D - 150 281 - -
Cmo17g00404 341 ProSiteProfiles PPC domain profile profile. 144 285 IPR005175 -
Cmo17g00404 341 MobiDBLite consensus disorder prediction 7 51 - -
Cmo17g00404 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 272 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00884 Cmo17g00404 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01394 Cmo-Chr2:8260276 Cmo17g00404 Cmo-Chr17:2679899 7.16E-39 dispersed
Cmo06g00662 Cmo-Chr6:3334907 Cmo17g00404 Cmo-Chr17:2679899 2.94E-59 dispersed
Cmo16g01203 Cmo-Chr16:8608087 Cmo17g00404 Cmo-Chr17:2679899 2.15E-58 dispersed
Cmo17g00404 Cmo-Chr17:2679899 Cmo02g01022 Cmo-Chr2:6215634 1.87E-65 dispersed
Cmo15g01287 Cmo-Chr15:8807628 Cmo17g00404 Cmo-Chr17:2679899 6.19E-76 wgd
Cmo17g00404 Cmo-Chr17:2679899 Cmo08g00884 Cmo-Chr8:5731032 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00404 - - csv:101203138 572.392