Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00425 ATGACTTGTCTTCTTAGAAACCAAGTTAACCATGGCGGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTCGCCCTCTCCGACGCCGAAGCTTCATTCATTGTTCGCCGCCAACTTAAATCTTTAGAAGATTACGAAAACCTCCCAGATGACTTCACATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACGTCGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTTTTAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTACGTCGGCGTCTTTTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGCCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTCGTAGCTTCTCCAAGCTCACCCTCATGTTTGAATTTGATATCAGCACCAACCGCTTCGTCGGCCGTTTCCCTGAGGTTGTTCTCGAATGGTCCGTCGCTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGAAATCCCACCTGCTCTGTTCACCAAGGAATTCGATGCCATTTTCTTAAACAATAACAGATTCAATTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCCGTCGTGTCCTTCGCCTACAACGAGTTCCATGGCTGCATTCCTAACACCATCGGCCATATGCCCAACCTCAACCAGGCCCTCTTCCTCGGCAACAACCTAAGCGGGTGTTTCCCTTACGAGATGGGGCAGCTCGTGAATATGACACTTATTGATGTTAGTGACAATTTGTTTGTCGGCGAGCTGCCTAAATCGTTGCCGGGGCTGCATAGTTTGGAGGTTTTGGATGTTAGTAACAATGAATTGAGGGGCTCTGTTTTTGGTGGTGTTTGTGAGTTGCCTAAATTGATTTACTTTAATTGTTCGAGTAATTATTTTAGTGAGGAAGATGCGGCGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGGGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGTTGTGCTGATGATCCATTTCTTCAGTCTCCATCGCCCAGGTTTAGGCCGCCGCCGTCACCATCTGTGGGTGAAATCCCTTACAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCGCCAACATCTCACACACGAACGCCCTCTGTTCCAGCCTCACCGCCACCAGTCCACTCTCCGCCACCACCAGTCCACTCTCCACCACCGCCCGACCAGTCTCCACCACCCCCCGTCCAAACAATCTCCACCTCCACCCGTATACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCCGTTTATTCTCCACCGCCACCAGAACAATCTCCACCTCCACCCGTATACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCCGTTTATTCTCCACCGCCACCAGAACAATCTCCACCTCCACCCGTATACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCCGTTTATTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCAGAACAGTCTCCGCCCCCACCAGAACAGTCTCCGCCCCCACCAGAACAATCTCCGCCCCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCACCGCCTCCAGAACAATCTCCACCTCCTGCTCCCGATTCTTCTCCACCGCCAGCGTTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCGGGCTACTAA 2355 54.14 MTCLLRNQVNHGGILLLLLLLSLPLLSVALSDAEASFIVRRQLKSLEDYENLPDDFTYELDIPDTFPNERLKKAYVALQAWKLAIYSDPFNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELALITDLALFHINSNRFCGIVPRSFSKLTLMFEFDISTNRFVGRFPEVVLEWSVAKYLDLRFNNFEGEIPPALFTKEFDAIFLNNNRFNSFIPHTIGNSTVSVVSFAYNEFHGCIPNTIGHMPNLNQALFLGNNLSGCFPYEMGQLVNMTLIDVSDNLFVGELPKSLPGLHSLEVLDVSNNELRGSVFGGVCELPKLIYFNCSSNYFSEEDAACVGSKESKNSFDDVGNCLGNRPGQRDAAKCSSVLDKPMECGGCADDPFLQSPSPRFRPPPSPSVGEIPYKLGLHHLRLCFHRQHLTHERPLFQPHRHQSTLRHHQSTLHHRPTSLHHPPSKQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2835184 2837965 + CmoCh17G004250.1 Cmo17g00425 400808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 552 634 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 600 683 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 12 392 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 438 557 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 600 683 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 523 606 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 392 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 438 557 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 523 606 - -
Cmo17g00425 784 MobiDBLite consensus disorder prediction 447 467 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 506 531 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 402 414 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 469 485 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 488 505 - -
Cmo17g00425 784 MobiDBLite consensus disorder prediction 445 784 - -
Cmo17g00425 784 Gene3D Ribonuclease Inhibitor 111 369 IPR032675 -
Cmo17g00425 784 MobiDBLite consensus disorder prediction 469 763 - -
Cmo17g00425 784 SUPERFAMILY L domain-like 84 350 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 552 634 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00425 - - - cpep:111806609 780.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01932 Cmo-Chr1:13801421 Cmo17g00425 Cmo-Chr17:2835184 2.64E-131 dispersed
Cmo08g00870 Cmo-Chr8:5621196 Cmo17g00425 Cmo-Chr17:2835184 5.34E-177 dispersed
Cmo14g01778 Cmo-Chr14:13715371 Cmo17g00425 Cmo-Chr17:2835184 5.36E-104 dispersed
Cmo17g00425 Cmo-Chr17:2835184 Cmo08g00869 Cmo-Chr8:5609995 7.95E-153 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01932 . 61 291 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 5.6e-53 206.8
Cmo14g01778 CST 43 271 Leucine-rich Repeat extension Gene Families AT1G62440 65.1 5.5e-48 190.3
Cmo08g00870 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 57.5 4.8e-44 177.2
Cmo12g01271 CCT 93 444 Leucine-rich Repeat extension Gene Families AT1G62440 61.9 5.3e-43 173.7
Cmo11g00596 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 2.9e-41 167.9
Cmo10g00642 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 5.5e-40 163.7
Cmo17g00425 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 1.5e-37 155.6
Cmo11g00596 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.6e-66 250.0
Cmo12g01271 CCT 38 444 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 2.1e-65 248.1
Cmo10g00642 CCT 14 412 Leucine-rich Repeat extension Gene Families AT4G13340 70.3 1.6e-60 231.9
Cmo14g01778 CST 43 367 Leucine-rich Repeat extension Gene Families AT4G13340 71.2 1.9e-53 208.4
Cmo01g01932 . 17 262 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 3.3e-50 197.6
Cmo08g00870 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.1e-48 192.6
Cmo08g00869 . 26 150 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 4.2e-37 154.1
Cmo06g01390 CST 14 367 Leucine-rich Repeat extension Gene Families AT4G13340 59.7 2.1e-36 151.8
Cmo11g00596 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 1.3e-71 268.1
Cmo12g01271 CCT 68 440 Leucine-rich Repeat extension Gene Families AT3G24480 74.4 1.3e-71 268.1
Cmo10g00642 CCT 27 414 Leucine-rich Repeat extension Gene Families AT3G24480 69.9 9.6e-67 251.9
Cmo01g01932 . 25 262 Leucine-rich Repeat extension Gene Families AT3G24480 60.7 6.0e-53 206.1
Cmo14g01778 CST 43 366 Leucine-rich Repeat extension Gene Families AT3G24480 67.4 3.0e-52 203.8
Cmo08g00870 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 57.8 1.6e-50 198.0
Cmo17g00425 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 64.0 1.4e-41 168.3
Cmo08g00869 . 17 150 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 5.5e-38 156.4
Cmo06g01390 CST 28 367 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 3.9e-36 150.2
Cmo14g01778 CST 15 366 Leucine-rich Repeat extension Gene Families AT3G22800 68.8 2.4e-67 253.8
Cmo06g01390 CST 7 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 1.0e-49 195.3
Cmo11g01999 . 56 388 Leucine-rich Repeat extension Gene Families AT3G22800 59.9 1.1e-40 165.2
Cmo11g00596 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 5.2e-38 156.4
Cmo01g01932 . 63 291 Leucine-rich Repeat extension Gene Families AT3G22800 53.9 2.0e-37 154.5
Cmo12g01271 CCT 79 438 Leucine-rich Repeat extension Gene Families AT5G25550 62.7 3.3e-39 160.2
Cmo10g00642 CCT 47 227 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 1.7e-38 157.9
Cmo11g00596 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.3 2.2e-38 157.5
Cmo06g01390 CST 27 360 Leucine-rich Repeat extension Gene Families AT5G25550 65.6 1.8e-37 154.5
Cmo01g01932 . 31 291 Leucine-rich Repeat extension Gene Families AT5G25550 53.6 7.0e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00425 Cmo_Chr17 FPKM 1.563525 1.961357 6.278037 5.85319 136.520721 138.031723 135.096481 4.229059 4.668368 5.101567