Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00425 ATGACTTGTCTTCTTAGAAACCAAGTTAACCATGGCGGCATTCTCCTCCTCCTCCTCCTCCTCTCTCTGCCACTTCTCTCCGTCGCCCTCTCCGACGCCGAAGCTTCATTCATTGTTCGCCGCCAACTTAAATCTTTAGAAGATTACGAAAACCTCCCAGATGACTTCACATACGAACTCGACATTCCCGACACTTTCCCTAATGAGAGGTTGAAAAAGGCCTACGTCGCCCTTCAAGCTTGGAAATTAGCCATTTACTCCGACCCTTTTAACATGACCGCCAATTGGGTTGGTGCCGATGTCTGCTCTTACGTCGGCGTCTTTTGTACCACGGCGCTTGATGACTCAACCATTGAAGTTGTCGCCGGCATTGATTTGAACCATGGCGATATTGCCGGCCATTTGGTGCCGGAATTAGCCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCCAATAGATTCTGTGGGATCGTTCCTCGTAGCTTCTCCAAGCTCACCCTCATGTTTGAATTTGATATCAGCACCAACCGCTTCGTCGGCCGTTTCCCTGAGGTTGTTCTCGAATGGTCCGTCGCTAAGTACCTCGATCTCAGGTTCAATAACTTCGAAGGAGAAATCCCACCTGCTCTGTTCACCAAGGAATTCGATGCCATTTTCTTAAACAATAACAGATTCAATTCCTTCATCCCACATACCATCGGAAACTCCACCGTCTCCGTCGTGTCCTTCGCCTACAACGAGTTCCATGGCTGCATTCCTAACACCATCGGCCATATGCCCAACCTCAACCAGGCCCTCTTCCTCGGCAACAACCTAAGCGGGTGTTTCCCTTACGAGATGGGGCAGCTCGTGAATATGACACTTATTGATGTTAGTGACAATTTGTTTGTCGGCGAGCTGCCTAAATCGTTGCCGGGGCTGCATAGTTTGGAGGTTTTGGATGTTAGTAACAATGAATTGAGGGGCTCTGTTTTTGGTGGTGTTTGTGAGTTGCCTAAATTGATTTACTTTAATTGTTCGAGTAATTATTTTAGTGAGGAAGATGCGGCGTGTGTTGGGTCTAAAGAATCTAAGAATTCTTTTGATGATGTTGGGAATTGTTTGGGGAATCGACCGGGGCAGAGAGATGCGGCCAAGTGTAGCTCTGTTTTGGATAAACCCATGGAGTGTGGTGGTTGTGCTGATGATCCATTTCTTCAGTCTCCATCGCCCAGGTTTAGGCCGCCGCCGTCACCATCTGTGGGTGAAATCCCTTACAAGTTGGGTCTCCACCATCTCCGATTGTGTTTCCACCGCCAACATCTCACACACGAACGCCCTCTGTTCCAGCCTCACCGCCACCAGTCCACTCTCCGCCACCACCAGTCCACTCTCCACCACCGCCCGACCAGTCTCCACCACCCCCCGTCCAAACAATCTCCACCTCCACCCGTATACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCCGTTTATTCTCCACCGCCACCAGAACAATCTCCACCTCCACCCGTATACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCCGTTTATTCTCCACCGCCACCAGAACAATCTCCACCTCCACCCGTATACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCCGTTTATTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCTCCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCACCCCCACCCGTTTACTCTCCACCGCCACCAGAACAATCTCCACCCCCACCCGTTTACTCTCCACCCCCACCAGAACAATCTCCGCCCCCACCCGTTCAATCTCCGCCGCCACCAGAACAATCTCCGCCGCCACCCGTTCAATCTCCGCCCCCACCAGAACAGTCTCCGCCCCCACCAGAACAGTCTCCGCCCCCACCAGAACAATCTCCGCCCCCACCAGAGCAATCTCCGCCGCCACCAGAGCAATCTCCACCGCCTCCAGAACAATCTCCACCTCCTGCTCCCGATTCTTCTCCACCGCCAGCGTTCGAGGACTTAATTCTCCCACCAAATATCGGCTTCCAGTATTCATCGCCGCCTCCACCACAGTTTCCGGGCTACTAA 2355 54.14 MTCLLRNQVNHGGILLLLLLLSLPLLSVALSDAEASFIVRRQLKSLEDYENLPDDFTYELDIPDTFPNERLKKAYVALQAWKLAIYSDPFNMTANWVGADVCSYVGVFCTTALDDSTIEVVAGIDLNHGDIAGHLVPELALITDLALFHINSNRFCGIVPRSFSKLTLMFEFDISTNRFVGRFPEVVLEWSVAKYLDLRFNNFEGEIPPALFTKEFDAIFLNNNRFNSFIPHTIGNSTVSVVSFAYNEFHGCIPNTIGHMPNLNQALFLGNNLSGCFPYEMGQLVNMTLIDVSDNLFVGELPKSLPGLHSLEVLDVSNNELRGSVFGGVCELPKLIYFNCSSNYFSEEDAACVGSKESKNSFDDVGNCLGNRPGQRDAAKCSSVLDKPMECGGCADDPFLQSPSPRFRPPPSPSVGEIPYKLGLHHLRLCFHRQHLTHERPLFQPHRHQSTLRHHQSTLHHRPTSLHHPPSKQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPVYSPPPPEQSPPPPVYSPPPPEQSPPPPVQSPPPPEQSPPPPVQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPPEQSPPPAPDSSPPPAFEDLILPPNIGFQYSSPPPPQFPGY 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2835184 2837965 + CmoCh17G004250.1 Cmo17g00425 400808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 552 634 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 600 683 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 12 392 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 438 557 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 600 683 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 523 606 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 392 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 438 557 - -
Cmo17g00425 784 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 523 606 - -
Cmo17g00425 784 MobiDBLite consensus disorder prediction 447 467 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 506 531 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 402 414 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 469 485 - -
Cmo17g00425 784 PRINTS Proline rich extensin signature 488 505 - -
Cmo17g00425 784 MobiDBLite consensus disorder prediction 445 784 - -
Cmo17g00425 784 Gene3D Ribonuclease Inhibitor 111 369 IPR032675 -
Cmo17g00425 784 MobiDBLite consensus disorder prediction 469 763 - -
Cmo17g00425 784 SUPERFAMILY L domain-like 84 350 - -
Cmo17g00425 784 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 552 634 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01932 Cmo-Chr1:13801421 Cmo17g00425 Cmo-Chr17:2835184 2.64E-131 dispersed
Cmo08g00870 Cmo-Chr8:5621196 Cmo17g00425 Cmo-Chr17:2835184 5.34E-177 dispersed
Cmo14g01778 Cmo-Chr14:13715371 Cmo17g00425 Cmo-Chr17:2835184 5.36E-104 dispersed
Cmo17g00425 Cmo-Chr17:2835184 Cmo08g00869 Cmo-Chr8:5609995 7.95E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00425 - - cpep:111806609 780.015