Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00427 ATGGAGCCCGGTCCTTTTAATCACCACATCAGGGGAGTGCCTACCCATGGGGGCCGATACATTCAGTACAATATCTATGGCAATCTATTTGAAGTTCCTAGGAAGTATATTCCTCCCATAAGGCCTGTTGGAAGAGGAGCTTATGGAATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGACGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCTACACATGGAACATGATAATATTATTGGTCTTGAAGATATTATAAGACCTCCTCAGAAGGAGACTTTCAATGATGTATACCTTGTTTATGAATTGATGGATACCGATCTGAATCAGATAATACGGTCCAATGAATCGTTGACTGATGAACATTGTCGGTACTTTGTGTACCAGTTGTTACGAGGGCTAAAATACGTACATTCTGCTAACGTTCTACACCGTGATTTGAAACCGAGCAATCTGTTCGTGAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACTGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAGTTGCTTCTTAATTGTTCAGAATACAGTGGAGCAATTGATATCTGGTCTGTTGGCTGTATATTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGACTATGTTCATCAGCTAAAACTTATTACTGAGCTCATTGGATCCCCCGATGACTCGAGCCTCGGATTCTTACGAAGCGACAATCCACAAAAATATTTTAGACTTCTTCCTCACTTCCCCAGGCAACATTTTTCCACTCGATTTCCCACCATGTCTCCTGCTGCAATCGACTTGCTGGAGAAGATGCTCGTCTTCGATCCTACGAAGCGCATTACAGTTGATGAGGCGCTGTGCCATCCTTACTTAGCACCTCTTCATGATACCAATGTGGAGCCAGTATGTCCAAGGCCCTTCAGTTTTGATTTCGAGCAGCCATCGTATACCGAAGAACACATTAAGGAACTTGTATGGAGAGAATCCATGAAGTTCAACCCGGATCCCGCTAACTAA 1113 42.32 MEPGPFNHHIRGVPTHGGRYIQYNIYGNLFEVPRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLLHMEHDNIIGLEDIIRPPQKETFNDVYLVYELMDTDLNQIIRSNESLTDEHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLFVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYSGAIDIWSVGCIFGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPQKYFRLLPHFPRQHFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDTNVEPVCPRPFSFDFEQPSYTEEHIKELVWRESMKFNPDPAN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2848649 2854031 - CmoCh17G004270.1 Cmo17g00427 400810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00427 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cmo17g00427 370 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00427 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Cmo17g00427 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 369 - -
Cmo17g00427 370 CDD STKc_TEY_MAPK 30 366 - -
Cmo17g00427 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cmo17g00427 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00427 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Cmo17g00427 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Cmo17g00427 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo17g00427 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00427 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00427 Cmo-Chr17:2848649 Cmo05g00267 Cmo-Chr5:1150727 4.20E-149 dispersed
Cmo15g01314 Cmo-Chr15:9024086 Cmo17g00427 Cmo-Chr17:2848649 0 wgd
Cmo17g00427 Cmo-Chr17:2848649 Cmo08g00862 Cmo-Chr8:5567966 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75001 PF00069 Pkinase 5.50E-69 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00427 K20600 - csv:101215189 691.419