Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00427 | ATGGAGCCCGGTCCTTTTAATCACCACATCAGGGGAGTGCCTACCCATGGGGGCCGATACATTCAGTACAATATCTATGGCAATCTATTTGAAGTTCCTAGGAAGTATATTCCTCCCATAAGGCCTGTTGGAAGAGGAGCTTATGGAATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGACGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCTACACATGGAACATGATAATATTATTGGTCTTGAAGATATTATAAGACCTCCTCAGAAGGAGACTTTCAATGATGTATACCTTGTTTATGAATTGATGGATACCGATCTGAATCAGATAATACGGTCCAATGAATCGTTGACTGATGAACATTGTCGGTACTTTGTGTACCAGTTGTTACGAGGGCTAAAATACGTACATTCTGCTAACGTTCTACACCGTGATTTGAAACCGAGCAATCTGTTCGTGAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACTGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAGTTGCTTCTTAATTGTTCAGAATACAGTGGAGCAATTGATATCTGGTCTGTTGGCTGTATATTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGACTATGTTCATCAGCTAAAACTTATTACTGAGCTCATTGGATCCCCCGATGACTCGAGCCTCGGATTCTTACGAAGCGACAATCCACAAAAATATTTTAGACTTCTTCCTCACTTCCCCAGGCAACATTTTTCCACTCGATTTCCCACCATGTCTCCTGCTGCAATCGACTTGCTGGAGAAGATGCTCGTCTTCGATCCTACGAAGCGCATTACAGTTGATGAGGCGCTGTGCCATCCTTACTTAGCACCTCTTCATGATACCAATGTGGAGCCAGTATGTCCAAGGCCCTTCAGTTTTGATTTCGAGCAGCCATCGTATACCGAAGAACACATTAAGGAACTTGTATGGAGAGAATCCATGAAGTTCAACCCGGATCCCGCTAACTAA | 1113 | 42.32 | MEPGPFNHHIRGVPTHGGRYIQYNIYGNLFEVPRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLLHMEHDNIIGLEDIIRPPQKETFNDVYLVYELMDTDLNQIIRSNESLTDEHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLFVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYSGAIDIWSVGCIFGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPQKYFRLLPHFPRQHFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDTNVEPVCPRPFSFDFEQPSYTEEHIKELVWRESMKFNPDPAN | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2848649 | 2854031 | - | CmoCh17G004270.1 | Cmo17g00427 | 400810 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00427 | 370 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo17g00427 | 370 | SMART | serkin_6 | 37 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00427 | 370 | SUPERFAMILY | Protein kinase-like (PK-like) | 40 | 330 | IPR011009 | - | |
Cmo17g00427 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 14 | 369 | - | - | |
Cmo17g00427 | 370 | CDD | STKc_TEY_MAPK | 30 | 366 | - | - | |
Cmo17g00427 | 370 | ProSitePatterns | Protein kinases ATP-binding region signature. | 43 | 67 | IPR017441 | GO:0005524 | |
Cmo17g00427 | 370 | Pfam | Protein kinase domain | 41 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00427 | 370 | Gene3D | Phosphorylase Kinase; domain 1 | 20 | 360 | - | - | |
Cmo17g00427 | 370 | Gene3D | Transferase(Phosphotransferase) domain 1 | 121 | 350 | - | - | |
Cmo17g00427 | 370 | ProSitePatterns | MAP kinase signature. | 72 | 175 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cmo17g00427 | 370 | ProSiteProfiles | Protein kinase domain profile. | 37 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00427 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED | 14 | 369 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo17g00427 | Cmo-Chr17:2848649 | Cmo05g00267 | Cmo-Chr5:1150727 | 4.20E-149 | dispersed | |
Cmo15g01314 | Cmo-Chr15:9024086 | Cmo17g00427 | Cmo-Chr17:2848649 | 0 | wgd | |
Cmo17g00427 | Cmo-Chr17:2848649 | Cmo08g00862 | Cmo-Chr8:5567966 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75001 | PF00069 | Pkinase | 5.50E-69 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00427 | K20600 | - | csv:101215189 | 691.419 |