Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00454 ATGAAGGCCATGCCCTTTCCTTACCCTTTTGATGACCTTCGTCCAAATGGGGTTTTGAATTTTTCCTCTGTTTCCGATTCTTCGCCGCCTCCCTTCCGCCGTCACAACCACCGTCAACACTGGAGTTCTACTGATAACACTAATCTGCTCAAACAGATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGACACTAGAAGAAGCCCAAGCCCTCCCACTTCCACTTCCACACTGTCTTCCTCTCTCGGCGGCGGCGGCGGTGGTGGTGGTACTGCCTCCACCGACACTACCGTGGCGGCGCCGCAGTCTTCTCTCCCTGAAAACCCTTCTCCTTTAGATAAATGTGGCGGCGGAGGCGGCCTTGGAATGGATGATTGGGAGAGCGTTTTGCCGGAATCCCCTGGGCAAGGACCCTCCATTCTTGGGTTAATTATGGGTGATGTGGAAGACCCATCTCTTGGATTGAATAAACTCCTGCAGAGCGGCGGTGGCGGTGGCGGTGTTGGTGGTGGTGGTGGTGGTGATTCTCATCTGGACTTGGAATTCTCCGGGAGTTTTTCCGGTGTCGATCATGGGTTGGTGTTCGAACCCAATACTCTCGCCGGCGAGTCCATTGTCGACCCTTCTCTCCAAGCCCCATCTTATGCTAGACTTTCCGCCGCCGTGTCGAACTCGAACGCCATGTTTTCCGGCGTGTTTCAGAATCAAAATCAGCTGTCGGAGACCGTTGACGAGAAGCCACAGATTTTCAATTCTCCCCAAGTTATGATGAATCAAAATCAAACCCAGTTCACTCATAATCCACCTCTGTTTATGCCTCTTCCTTTTGCCTCTCCCGGCCAAGATCACCACCAGAACCACCACCACTTCCTCGGCGGTGTCCCGCCGACAAAACGGTTCAATTCCGGTCCGATTCCACCAAATTATCCAGTGAAATCACCATTTCTTGATTCGGGTCAAGAAAGTATCAATCGCAGACAACAACAACAACAACAGCCCCAACAAGTTCAGTTGTTTCCTCATCAGCAGCAGAGGCCATCCATGGCGGCCTTGGCCAAACAAAAAATGGTGAATGAAGACATAGCGAATCAACAACTCCAACAGGGCATCTCCGACCAGCTATTCAAGGCCGTAGAGCTGATCGAAACAGGCAATTCAGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCTATTGGGAAGCCCTTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCCTTGCAATCGCTCCTTCAAAACCCATCAAACCCCTCCAAACCTTCCCCTCTCAGCATCATTTTCAAAATCGCGGCCTACAAATCCTTCTCCGAAGTCTCCCCTGTTCTCCAATTTGCCAATTTCACCTCAAACCAAGCCCTCCTTGAGGCCTTTAACGGCTCCGGTCGGATTCACATCATCGACTTCGACATCGGCTACGGTGGTCAATGGGCTTCTCTAATGCAGGAGCTTGCCTTAAGAGGACCCCCATTTCTCAAAATCACTGCCTTTGCTTCCACTTCCACACACGACGATTTCGAGCTCGGTTTCACTCAAGAAAACCTCAAGAATTTCGCTAACGATCTCAACATTGGATTCGAGCTCGAAATCATAAACATCGAGTCTCTCAATTCTGGTTCATGGCCTCTAGCTCTTAATGTCTCTGAAAACGAAGCCATTGCAGTGAATCTCCCCGTTGGTTCCCTTTCATTGCCAATGATCCTCCGTTTCATAAAGCATCTTAACCCTAAAATCGTAGTGTCTGTCGACCGAGGCTGCAGCCGAGTCGATGCGCCATTCCCCCACCGTGTTATCCACGGTCTGCACTCATACTCGGCGCTGCTCGAATCCATGGAAGCTGTAACAGTGAATATGGATGCCCAGCTGAAAATTGAAAGGTACTTGGTGCAGCCATGTATCGAAAAAGTGGTGACGAGTTCTCAATGTTTGAACGAGAGGCTTCCGCCATTGAAATCGATGTTTTTGTCATCCGGGTTTTCGCCATTGACATTCAGTAACTTCACGGAGTCGCAGGCGGAGTGTCTGCTGCAGAGGACGCCAGTTCAGGGGTTCCATATCGACAAGAGACACTCCTCGCTTGTTCTATGCTGGCACCGGAAGGAGCTCGTTTCAATCTCTGCTTGGAGGTCTTGA 2172 50.78 MKAMPFPYPFDDLRPNGVLNFSSVSDSSPPPFRRHNHRQHWSSTDNTNLLKQICYVGAAEPTSVLDTRRSPSPPTSTSTLSSSLGGGGGGGGTASTDTTVAAPQSSLPENPSPLDKCGGGGGLGMDDWESVLPESPGQGPSILGLIMGDVEDPSLGLNKLLQSGGGGGGVGGGGGGDSHLDLEFSGSFSGVDHGLVFEPNTLAGESIVDPSLQAPSYARLSAAVSNSNAMFSGVFQNQNQLSETVDEKPQIFNSPQVMMNQNQTQFTHNPPLFMPLPFASPGQDHHQNHHHFLGGVPPTKRFNSGPIPPNYPVKSPFLDSGQESINRRQQQQQQPQQVQLFPHQQQRPSMAALAKQKMVNEDIANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFKEALQSLLQNPSNPSKPSPLSIIFKIAAYKSFSEVSPVLQFANFTSNQALLEAFNGSGRIHIIDFDIGYGGQWASLMQELALRGPPFLKITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEIINIESLNSGSWPLALNVSENEAIAVNLPVGSLSLPMILRFIKHLNPKIVVSVDRGCSRVDAPFPHRVIHGLHSYSALLESMEAVTVNMDAQLKIERYLVQPCIEKVVTSSQCLNERLPPLKSMFLSSGFSPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWRS 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3141301 3143472 + CmoCh17G004540.1 Cmo17g00454 400837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00454 723 MobiDBLite consensus disorder prediction 21 44 - -
Cmo17g00454 723 MobiDBLite consensus disorder prediction 62 127 - -
Cmo17g00454 723 Pfam GRAS domain family 374 722 IPR005202 -
Cmo17g00454 723 MobiDBLite consensus disorder prediction 65 111 - -
Cmo17g00454 723 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 38 722 IPR005202 -
Cmo17g00454 723 PANTHER SCARECROW-LIKE PROTEIN 6 38 722 - -
Cmo17g00454 723 ProSiteProfiles GRAS family profile. 363 722 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00799 Cmo17g00454 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00829 Cmo-Chr4:4135304 Cmo17g00454 Cmo-Chr17:3141301 5.71E-70 dispersed
Cmo06g00799 Cmo-Chr6:4278969 Cmo17g00454 Cmo-Chr17:3141301 1.25E-158 dispersed
Cmo16g01195 Cmo-Chr16:8521675 Cmo17g00454 Cmo-Chr17:3141301 2.35E-150 dispersed
Cmo17g00454 Cmo-Chr17:3141301 Cmo04g03104 Cmo-Chr4:21588625 2.67E-40 dispersed
Cmo17g00454 Cmo-Chr17:3141301 Cmo08g00832 Cmo-Chr8:5334318 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11382 PF03514 GRAS 1.90E-92 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00454 - - csv:101214718 1145.18