Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00473 ATGTCCTTGAGTACCCAAATTGATAGCCTTTGGGTCTTCGCGTTGGCCTCCAAATGCTCCTCTCTCACCAAAGAGACCCTCCTTTGCTCACTCCTCTTTCTTCTCCTTATTTGCTTTCTTGTTTCCATTTTCCACTGGGCCCATCCTGGCGGCCCTGCTTGGGGCTCCCACGGGTGCTACCGCCGCACCGCCGCCGTCATCCCTGGCCCAAGAGGCCTCCCACTCATCGGGAGCATGACCTTGATGATGGGTCTGGCCCACCAACGAATCGCCGCCATCGCCAAATCCCTAGGAGCTACCCGTCTCATGGCTTTCTCACTCGCCTACACTCGCGTCATTGTCACTTCTCATCCCGACGTTGCTAAAGAGATCCTTAACAGCTCCGTCTTTGCTGACCGTCCGATTAAGGAATCTGCTTACTCTTTGATGTTCAATCGCGCCATTGGTTTCGCCCCTTATGGCCTCTACTGGCGGACCCTCCGCCGTATCGCTTCCCACCATCTCTTCTCCCCTAAACAAATCAAATCCTCTGAGTCACACCGCCGCCATATCGCTTCCCAAATGCTCACAATCTTCTCTTCCACCACCACCTCCTCCACCCACCGCGTCCGCGACACGCTCAAACGAGCCTCTTTGAACAGCATGATGGCCTCCGTCTTCGGCCGCTTCTACACCCTCACCGACTCCAATAACGAAGCCGAACAACTCCAAACCCTTGTCGCCGAAGGCTACGATTTATTGGGCCTTCTCAACTGGTCCGACCATCTCCCCTTCTTAGCCGATTTCGACCCACAGAGAATCCGGTTCAGATGCTCCCAATTGGTCCCCCAAGTGAACCAACTCGTCGGCCGGATCATCGCGGAACACCGGTCCAATTCAACCCCCCAACAAATCACGGATTTCGTCGACGTTCTTCTCTCTCTTCAACAATCTGACAATCTCTCTGACTCCGACATCATAGCCGTTCTCTGGGAAATGATATTCAGGGGTACGGACACGACGGCGGTATTAATGGAGTGGATTCTGGCCAGGATGGTTGTTCACCCGGAGGTGCAAGAAAAGGTACAATCGGAACTAGACACGGTGGTTGGGAGATCACGTGGCGTCGTGGAATCCGACATTCCGTCGCTGGTTTATCTAACCGCGGTGGTTAAAGAAGTTCTAAGGTTACACCCACCGGGCCCACTTTTATCCTGGGCTCGCTTAGCCATCACTGACACAACCATCGACGGTCACCACGTGCCTAAGGGCACCACTGCCATGGTTAACATGTGGTCGATAGCACGAGACCCACAGGTCTGGTCAGACCCACTTGAATTTAAACCCGAGAGGTTTGTGTCCGGGGGCGCTGACGTGGAGTTTTCAGTTATGGGTTCAGATCTACGGCTCGCTCCATTCGGGTCGGGTCGGAGAACTTGCCCCGGAAAGGCTCTTGCTTGGACAACTGTCATCTTCTGGGTGGCTACACTTTTACACGAGTTTAAATGGTTGCCTTCGCCCAACCAAAACGACGCCGTCGACTTCTCTGAAGTTCTCAAGCTCTCTTGCGAGATGGCCAATCCACTCACCGTTAAACTATGCCCAAGGCGTAATTCAAGCTTTTAA 1605 53.77 MSLSTQIDSLWVFALASKCSSLTKETLLCSLLFLLLICFLVSIFHWAHPGGPAWGSHGCYRRTAAVIPGPRGLPLIGSMTLMMGLAHQRIAAIAKSLGATRLMAFSLAYTRVIVTSHPDVAKEILNSSVFADRPIKESAYSLMFNRAIGFAPYGLYWRTLRRIASHHLFSPKQIKSSESHRRHIASQMLTIFSSTTTSSTHRVRDTLKRASLNSMMASVFGRFYTLTDSNNEAEQLQTLVAEGYDLLGLLNWSDHLPFLADFDPQRIRFRCSQLVPQVNQLVGRIIAEHRSNSTPQQITDFVDVLLSLQQSDNLSDSDIIAVLWEMIFRGTDTTAVLMEWILARMVVHPEVQEKVQSELDTVVGRSRGVVESDIPSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTTIDGHHVPKGTTAMVNMWSIARDPQVWSDPLEFKPERFVSGGADVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVIFWVATLLHEFKWLPSPNQNDAVDFSEVLKLSCEMANPLTVKLCPRRNSSF 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3418249 3420131 - CmoCh17G004730.1 Cmo17g00473 400856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00473 534 PANTHER CYTOCHROME P450 78A6 4 532 - -
Cmo17g00473 534 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Cmo17g00473 534 Pfam Cytochrome P450 68 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 423 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 Gene3D Cytochrome P450 58 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 SUPERFAMILY Cytochrome P450 67 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PRINTS P450 superfamily signature 473 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo17g00473 534 PANTHER CYTOCHROME P450 78A7-RELATED 4 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00473 Cmo-Chr17:3418249 Cmo12g00085 Cmo-Chr12:453319 2.97E-176 dispersed
Cmo20g01128 Cmo-Chr20:10922050 Cmo17g00473 Cmo-Chr17:3418249 2.64E-169 transposed
Cmo17g00473 Cmo-Chr17:3418249 Cmo08g00824 Cmo-Chr8:5248033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00473 K20619 - csv:101216159 837.795