Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00535 | ATGGAATTTCTTACCAAATCAAACGCCTACTCGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAAGATGATGAAATCCGGGGTGTTGCATGCGATTTCTTCCCAAATTCACGCACCCAAAACCAGGAATGGGTTCAACACCCTCCAATAAATCAGCCCTTGGATCACCACCCTCTCATGGACTTATCCCTCCGGATGGAAACTAATGGGTTTGGCGTTGTGGAGAGAGAGCACATGTTCGACAAGGTTGTCACTCCAAGCGATGTCGGCAAATTAAACCGTTTGGTCATCCCCAAACAACACGCCGAGAAATACTTCCCTTTGGACTCTGCCACCAACGACAAGGGCCTCATCTTGAACTTTGAGGACCCTAATGGAAAGCCCTGGCGCTTTCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTGATGACCAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAGCTCGATGCAGGCGACGTCGTTTCCTTTCACCGTGGCCTTGGCGATTCCGCTAGGGATCGCCTTTTCATCGACTGGCGCCGCCGTCCTAACGCCCCAACTCCTCCTCCTCACCACCACTTCTCCAACCCTCCTCTCCTCTTCCTCCCACAATCCCTCCGCTGGGCCACCGCCCGCCACTTGCCTCCACCGGCGCAGCCACCGCCTCACCACCGCCTCTATTCCAATTACGCCTTCGAAATCCCTAATTTGGGTATGCCTCATAACAACAATTCTTCCATGTATTATTTTAGACCCACCTCCATGTCCTCCTCTTCTTCGGAGCTTGTTGTTCATAGTGAAGGGTCTTCCATGGGGATTAAGAAACCCACCCCCGGTGCCGCGAAACGGCTGAGACTCTTCGGAGTAAACATGGAATGTGCTGCAGAGGATGGAGGAGGAGGAGGAGGAGAAGATCTGTCAAACGGCGGCGTTTCAAGGAGAGGGAAACAGCCCTTCTCGTTGAATTGGGACTTGGTTTAA | 987 | 52.08 | MEFLTKSNAYSEEEEEEEEEEEDDEIRGVACDFFPNSRTQNQEWVQHPPINQPLDHHPLMDLSLRMETNGFGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSATNDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFHRGLGDSARDRLFIDWRRRPNAPTPPPHHHFSNPPLLFLPQSLRWATARHLPPPAQPPPHHRLYSNYAFEIPNLGMPHNNNSSMYYFRPTSMSSSSSELVVHSEGSSMGIKKPTPGAAKRLRLFGVNMECAAEDGGGGGGEDLSNGGVSRRGKQPFSLNWDLV | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5282653 | 5283639 | + | CmoCh17G005350.1 | Cmo17g00535 | 400918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00535 | 328 | Pfam | B3 DNA binding domain | 80 | 184 | IPR003340 | GO:0003677 | |
Cmo17g00535 | 328 | SUPERFAMILY | DNA-binding pseudobarrel domain | 77 | 181 | IPR015300 | - | |
Cmo17g00535 | 328 | Gene3D | - | 73 | 196 | IPR015300 | - | |
Cmo17g00535 | 328 | Coils | Coil | 1 | 21 | - | - | |
Cmo17g00535 | 328 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cmo17g00535 | 328 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 27 | 298 | IPR044800 | GO:0003700 | |
Cmo17g00535 | 328 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Cmo17g00535 | 328 | CDD | B3_DNA | 78 | 167 | IPR003340 | GO:0003677 | |
Cmo17g00535 | 328 | SMART | B3_2 | 80 | 185 | IPR003340 | GO:0003677 | |
Cmo17g00535 | 328 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 27 | 298 | - | - | |
Cmo17g00535 | 328 | ProSiteProfiles | B3 DNA-binding domain profile. | 80 | 185 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00966 | Cmo-Chr2:5922021 | Cmo17g00535 | Cmo-Chr17:5282653 | 3.60E-72 | dispersed | |
Cmo04g00786 | Cmo-Chr4:3937439 | Cmo17g00535 | Cmo-Chr17:5282653 | 6.08E-69 | dispersed | |
Cmo08g00001 | Cmo-Chr8:13601 | Cmo17g00535 | Cmo-Chr17:5282653 | 7.42E-131 | dispersed | |
Cmo16g00647 | Cmo-Chr16:3189084 | Cmo17g00535 | Cmo-Chr17:5282653 | 4.83E-67 | dispersed | |
Cmo17g00535 | Cmo-Chr17:5282653 | Cmo18g01060 | Cmo-Chr18:11230116 | 1.88E-46 | dispersed | |
Cmo17g00535 | Cmo-Chr17:5282653 | Cmo15g01401 | Cmo-Chr15:9532332 | 1.54E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11390 | PF02362 | B3 | 7.80E-29 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00535 | - | - | cmos:111436350 | 649.432 |