Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00535 ATGGAATTTCTTACCAAATCAAACGCCTACTCGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAAGATGATGAAATCCGGGGTGTTGCATGCGATTTCTTCCCAAATTCACGCACCCAAAACCAGGAATGGGTTCAACACCCTCCAATAAATCAGCCCTTGGATCACCACCCTCTCATGGACTTATCCCTCCGGATGGAAACTAATGGGTTTGGCGTTGTGGAGAGAGAGCACATGTTCGACAAGGTTGTCACTCCAAGCGATGTCGGCAAATTAAACCGTTTGGTCATCCCCAAACAACACGCCGAGAAATACTTCCCTTTGGACTCTGCCACCAACGACAAGGGCCTCATCTTGAACTTTGAGGACCCTAATGGAAAGCCCTGGCGCTTTCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTGATGACCAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAGCTCGATGCAGGCGACGTCGTTTCCTTTCACCGTGGCCTTGGCGATTCCGCTAGGGATCGCCTTTTCATCGACTGGCGCCGCCGTCCTAACGCCCCAACTCCTCCTCCTCACCACCACTTCTCCAACCCTCCTCTCCTCTTCCTCCCACAATCCCTCCGCTGGGCCACCGCCCGCCACTTGCCTCCACCGGCGCAGCCACCGCCTCACCACCGCCTCTATTCCAATTACGCCTTCGAAATCCCTAATTTGGGTATGCCTCATAACAACAATTCTTCCATGTATTATTTTAGACCCACCTCCATGTCCTCCTCTTCTTCGGAGCTTGTTGTTCATAGTGAAGGGTCTTCCATGGGGATTAAGAAACCCACCCCCGGTGCCGCGAAACGGCTGAGACTCTTCGGAGTAAACATGGAATGTGCTGCAGAGGATGGAGGAGGAGGAGGAGGAGAAGATCTGTCAAACGGCGGCGTTTCAAGGAGAGGGAAACAGCCCTTCTCGTTGAATTGGGACTTGGTTTAA 987 52.08 MEFLTKSNAYSEEEEEEEEEEEDDEIRGVACDFFPNSRTQNQEWVQHPPINQPLDHHPLMDLSLRMETNGFGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSATNDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFHRGLGDSARDRLFIDWRRRPNAPTPPPHHHFSNPPLLFLPQSLRWATARHLPPPAQPPPHHRLYSNYAFEIPNLGMPHNNNSSMYYFRPTSMSSSSSELVVHSEGSSMGIKKPTPGAAKRLRLFGVNMECAAEDGGGGGGEDLSNGGVSRRGKQPFSLNWDLV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5282653 5283639 + CmoCh17G005350.1 Cmo17g00535 400918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00535 328 Pfam B3 DNA binding domain 80 184 IPR003340 GO:0003677
Cmo17g00535 328 SUPERFAMILY DNA-binding pseudobarrel domain 77 181 IPR015300 -
Cmo17g00535 328 Gene3D - 73 196 IPR015300 -
Cmo17g00535 328 Coils Coil 1 21 - -
Cmo17g00535 328 MobiDBLite consensus disorder prediction 1 26 - -
Cmo17g00535 328 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 298 IPR044800 GO:0003700
Cmo17g00535 328 MobiDBLite consensus disorder prediction 11 26 - -
Cmo17g00535 328 CDD B3_DNA 78 167 IPR003340 GO:0003677
Cmo17g00535 328 SMART B3_2 80 185 IPR003340 GO:0003677
Cmo17g00535 328 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 27 298 - -
Cmo17g00535 328 ProSiteProfiles B3 DNA-binding domain profile. 80 185 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00966 Cmo-Chr2:5922021 Cmo17g00535 Cmo-Chr17:5282653 3.60E-72 dispersed
Cmo04g00786 Cmo-Chr4:3937439 Cmo17g00535 Cmo-Chr17:5282653 6.08E-69 dispersed
Cmo08g00001 Cmo-Chr8:13601 Cmo17g00535 Cmo-Chr17:5282653 7.42E-131 dispersed
Cmo16g00647 Cmo-Chr16:3189084 Cmo17g00535 Cmo-Chr17:5282653 4.83E-67 dispersed
Cmo17g00535 Cmo-Chr17:5282653 Cmo18g01060 Cmo-Chr18:11230116 1.88E-46 dispersed
Cmo17g00535 Cmo-Chr17:5282653 Cmo15g01401 Cmo-Chr15:9532332 1.54E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11390 PF02362 B3 7.80E-29 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00535 - - cmos:111436350 649.432