Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00539 | ATGGAGCTGGATGGCATCGAGGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCCATTTCCAAGCCTCGGATCAACAATAACGACAATCCCACCACCACAAGTGTTCACGAGCTTCTCGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGCCCCAATGGTCATACCCTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGTCCGACGTGCAGACAAGAGCTCGGCGATATCAGGTGTCTAGCGTTAGAGAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCCCGGAGATATTGCCTTACTACAGCAAACTCAAACACGAGTCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGTGACGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTCGAAAATGCTACATGGATGCTAACTGTGTTTCACTGTTTTGGGCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCGTTTCTCCGATTCATGGGGGACGAAACGGATGCTCGAAACTACAGTTACAGCCTTGAGGTGGGTGGAAATGGGAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTCGAGACAGCCACGATGGCCTCATTATACAACGAAACATGGCGCTCTTCTTTTCGGGTGGAGAAAGGAAAGAGCTGAAGCTTCGGATCACAGGACGGATTTGGAAAGAACAAAATAAACAGTAA | 915 | 47.32 | MELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 5342452 | 5344900 | + | CmoCh17G005390.1 | Cmo17g00539 | 400922 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00539 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 96 | IPR013083 | - | |
Cmo17g00539 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 302 | - | - | |
Cmo17g00539 | 304 | CDD | Sina | 167 | 295 | - | - | |
Cmo17g00539 | 304 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
Cmo17g00539 | 304 | Pfam | Seven in absentia protein family | 95 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cmo17g00539 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 160 | IPR013083 | - | |
Cmo17g00539 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - | |
Cmo17g00539 | 304 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - | |
Cmo17g00539 | 304 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT3 | 1 | 302 | - | - | |
Cmo17g00539 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270 | |
Cmo17g00539 | 304 | SUPERFAMILY | RING/U-box | 47 | 93 | - | - | |
Cmo17g00539 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 294 | IPR008974 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo17g00539 | Cmo-Chr17:5342452 | Cmo18g01361 | Cmo-Chr18:12800605 | 4.86E-180 | dispersed | |
Cmo04g02404 | Cmo-Chr4:17906023 | Cmo17g00539 | Cmo-Chr17:5342452 | 5.98E-23 | transposed | |
Cmo17g00539 | Cmo-Chr17:5342452 | Cmo08g00116 | Cmo-Chr8:602767 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00539 | K04506 | - | csv:101209363 | 644.039 |