Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00545 ATGTTCGCACATTTCATTCTTCCGCACAGAGCTTACTTTTCTGTTAAATCTGAATTTTGGGGTAAGAATTTGGATTTTCGAAACAGAAATGATAGTTTGAGTGATAATTCAAGAAAATCTCATGTGTATTTTCAACCGATTAGAGCTGGTGTGAAATGGAGGAAGGAGCTTCCGTTTGATAATGTAATACAGAGGGATAAGAAGCTGAAATTGGTTACTCGGATTAGGAAGATTCTAGTTCAACATCATGATAATGTTATGTCACTTAGGGGTTTGGGTAAATTCAGGAGAGATTTAGGTGTACAGGAAAAGACGAGGCTCATTGAGTTGTTGAAGATGTTCCCTGCAGTATTTGAGATTGTAGAAGAACGGGCGTTTTCTTTGAAATTCAAATTGACGGAAGAGGCTGAAAGGTTGTACTTCGAGGAGCTGAAGATCAGAAATGAAATGGAAGGTTTGTTGGTTACTAAGCTGAGGAAGTTACTGATGATGTCTGCTGATAAGCGAATATTGTTGGAGAAAATTGCACATTTGAGGACTGATTTTGGTCTTCCTTCCGAGTTTCGTGACACGATTTGCCATCGTTATCCTCAGTACTTTAGAGTTGTGGCAACCGAGAGCGGTCCAGCTCTCGAATTGACACACTGGGATCCTGAACTTGCTGTTTCTGTAGCAGAGTTAGCCGAGGAGGAGAACCGAGCTAGAGAATTAGAAGAGAAGAATTTGATTATTGACCGACCGTTGAAGTTTAATCGAGTGAAGCTACCTAAGGGGCTTAAGCTTTCGAAGAATGATATGAGGAAAATGAATGAGTTTAGGGACATTCCTTATATCTCTCCGTATTCTGATTTCTCAGGGTTTAAGGCAGGTACACCCCAGAAAGAGAAACATGCTTGTGGGGTTGTTCATGAGATTTTAAGCCTTACACTTGAGAAGAGAACCCTTGTTGATCATTTCACTCATTTCCGGGAGGAGTTTAGATTCTCCCAGCAGTTGAGGGGGATGCTAATAAGGCATCCCAATATGTTTTATGTCTCGTTGAAAGGGGATAAAAACTCGGTTTTCCTCAGAGAAGCATATCGCGATTCTCAGTTGATCGACAAAGATCGGTTGTTAATCGTAAAGGAGAAGTTTCGAGGTCTTGTGGCTGTTCCTCAATTCAAAGGCAGAGGAGCTCCCGAAAGTGACACGGATTGGCGAGAAACCAATCATGGAGATGATATGAGAGGTGAAGAATGGTCTGATGTCGACGATGACGATGATGAATTCGACAACGATGGTGAGGATGACTGGATTGATGAACAGATCAATAACTTGGAAATGGCTGATCAGAGGCTTCTTTCTCCTCCGGCATTACCTTATGGACTGCCCCAAGAAAGATGGTGA 1386 41.85 MFAHFILPHRAYFSVKSEFWGKNLDFRNRNDSLSDNSRKSHVYFQPIRAGVKWRKELPFDNVIQRDKKLKLVTRIRKILVQHHDNVMSLRGLGKFRRDLGVQEKTRLIELLKMFPAVFEIVEERAFSLKFKLTEEAERLYFEELKIRNEMEGLLVTKLRKLLMMSADKRILLEKIAHLRTDFGLPSEFRDTICHRYPQYFRVVATESGPALELTHWDPELAVSVAELAEEENRARELEEKNLIIDRPLKFNRVKLPKGLKLSKNDMRKMNEFRDIPYISPYSDFSGFKAGTPQKEKHACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPNMFYVSLKGDKNSVFLREAYRDSQLIDKDRLLIVKEKFRGLVAVPQFKGRGAPESDTDWRETNHGDDMRGEEWSDVDDDDDEFDNDGEDDWIDEQINNLEMADQRLLSPPALPYGLPQERW 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5539202 5540587 + CmoCh17G005450.1 Cmo17g00545 400928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00545 461 MobiDBLite consensus disorder prediction 393 411 - -
Cmo17g00545 461 Pfam Plant organelle RNA recognition domain 55 383 IPR021099 GO:0003723
Cmo17g00545 461 Coils Coil 220 240 - -
Cmo17g00545 461 MobiDBLite consensus disorder prediction 389 430 - -
Cmo17g00545 461 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 435 IPR045040 GO:0003723
Cmo17g00545 461 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 18 435 IPR040293 GO:0000373|GO:0003723
Cmo17g00545 461 MobiDBLite consensus disorder prediction 412 430 - -
Cmo17g00545 461 MobiDBLite consensus disorder prediction 442 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00545 - - - cmax:111488626 858.981
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00127 Cmo17g00545 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01519 Cmo-Chr14:12175975 Cmo17g00545 Cmo-Chr17:5539202 1.01E-67 dispersed
Cmo15g01481 Cmo-Chr15:10049969 Cmo17g00545 Cmo-Chr17:5539202 1.47E-36 dispersed
Cmo17g00545 Cmo-Chr17:5539202 Cmo19g00355 Cmo-Chr19:3065427 9.58E-45 dispersed
Cmo09g00550 Cmo-Chr9:2619532 Cmo17g00545 Cmo-Chr17:5539202 3.59E-55 transposed
Cmo15g00606 Cmo-Chr15:2944868 Cmo17g00545 Cmo-Chr17:5539202 1.26E-43 transposed
Cmo17g00568 Cmo-Chr17:5838498 Cmo17g00545 Cmo-Chr17:5539202 1.58E-43 transposed
Cmo17g01138 Cmo-Chr17:9263144 Cmo17g00545 Cmo-Chr17:5539202 9.82E-50 transposed
Cmo18g00904 Cmo-Chr18:10278599 Cmo17g00545 Cmo-Chr17:5539202 1.24E-25 transposed
Cmo06g00033 Cmo-Chr6:227958 Cmo17g00545 Cmo-Chr17:5539202 1.41E-38 transposed
Cmo17g00545 Cmo-Chr17:5539202 Cmo08g00127 Cmo-Chr8:663857 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1082 . . . . . . . . . Cmo17g00545 . . . . . . . Bhi01g02663 . . . Hepe05g1249 . . . . . . . . . . . . . . . . . Blo02g00417 . . Bda13g00292 . . Bma02g00998 . . . . . Cma17g00564 . Car17g00518 Cpe12g00478 . . . . . . . . . . . . . . . . . . .
Vvi15g740 Blo01g00237 . . Bda08g00113 . Bpe05g01024 . . Cmo08g00127 Cmo17g00545 . . . . . . . . . . . . . . . . . . . . . Cone14ag0412 Cone15ag0451 . . . . . . . . . . . . . . . . . . . . . Cpe17g01025 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010663 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00545 Cmo_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.9096 2.504101 2.349114